Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00287 ATGTTCCGCCGCGCCACATCCACCTTCCTTTCACGCGCCGCTGCCACTCGCCGCTTCTCCACCGATGTGGCCACCCCCACCACCAATTCCAGTTTCATTGAAGCGTGGAGGAAAGTTAGCCCCAATATCGATCCACCAAAGACGCCACTCGAATTCCTCAAAACTCGTCCACCTGTTCCTTCTACTATCCCTACCAAACTCACCGTCAATTTTGTGCTTCCTTATTCTTCTCAATTGGCCGCTAAAGAGGTTGATAGTGTTATAATCCCAGCTACAACTGGTGAGATGGGTGTTCTCCCAGGACACGTCGCTACAATCGCAGAGTTGAAACCTGGGGTCCTGACAGTACAAGAAGGGACTGATACAACCAAGTATTTTGTAAGCAGTGGTTTCGCTTTCATCCATGCAAACTCTGTGGCTGATATTATTGCTGTAGAGGCTGTACCTGTGAATCAACTTGATGCAGACCTAGTGCAGAAGGGTCTTCAAGAGTTCACTCAGAAACTCAACTCAGCAACAACGGACTTGGAGAAAGCCGAAGCTCAGATTGGAGTTGACGTGCACAGTGCTCTCAACTCAGCTCTTACAGGCTAA 594 0.4916 MFRRATSTFLSRAAATRRFSTDVATPTTNSSFIEAWRKVSPNIDPPKTPLEFLKTRPPVPSTIPTKLTVNFVLPYSSQLAAKEVDSVIIPATTGEMGVLPGHVATIAELKPGVLTVQEGTDTTKYFVSSGFAFIHANSVADIIAVEAVPVNQLDADLVQKGLQEFTQKLNSATTDLEKAEAQIGVDVHSALNSALTG 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00287 197 NCBIfam ATP synthase F1 subunit epsilon 78 182 IPR001469 GO:0015986|GO:0045261|GO:0046933
Vivi5g00287 197 Gene3D - 154 196 - -
Vivi5g00287 197 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 67 139 IPR020546 GO:0015986
Vivi5g00287 197 Coils Coil 162 182 - -
Vivi5g00287 197 CDD F1-ATPase_delta 67 190 IPR001469 GO:0015986|GO:0045261|GO:0046933
Vivi5g00287 197 Hamap ATP synthase epsilon chain [atpC]. 65 185 IPR001469 GO:0015986|GO:0045261|GO:0046933
Vivi5g00287 197 Gene3D - 57 153 IPR036771 -
Vivi5g00287 197 PANTHER ATP SYNTHASE DELTA/EPSILON CHAIN 28 197 IPR001469 GO:0015986|GO:0045261|GO:0046933
Vivi5g00287 197 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 67 148 IPR036771 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00287 Vivi-Chr5 3656651 3659945 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00287 1 197 Primary Pumps ATPases AT5G47030 67.805 9.38e-99 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00287 K02134 - gmx:100780778 315.849