Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00270 ATGGTGAAATCGAAAAAATTTAGAGGTGTTCGGCAACGCCATTGGGGCTCTTGGGTTTCGGAGATTCGTCACCCTTTATTGAAAAGGAGAGTATGGCTAGGAACATTTGAAACAGCTGAAGAAGCAGCAAGAGCATATGATGAAGCAGCCATTTTAATGAGTGGAAGAAATGCAAAAACAAATTTTCCAGTTTCTGATAACAATCCAATACCAAATGACAATAATAATAATAATAATAATAACCAAAAATTATTTGCATCTTCTTCTTCTTCTTCAAATTCCACTACTACTACTAATACATCACTCTCTGCAATTCTAAGTGCAAAGCTTAGAAAATGTTGTAAATCACCTTCACCTTCACTTACTTGTCTAAGGCTTGACACTGAGAATTCACACTTTGGAGTATGGCAAAAACGAGCCGGCCCTCGTTCGGACTCGAGTTGGATCATGATGGTTGAATTGGAAAGGAAGAAGAAAGAACAAGAGGAAGGAGAAATAGTACCAAATTCTAATTCGGATATATTGCCTCCTATTGTTAATGATAATTCTGAGAATGTCGTGAAACCTGAAGAGGAGGAAGAAGATGAAGAAGAAGAAAGAAATGATGATAACAATGGATTGGATGAAGAACAAAGAATTGCACTTCAAATGATTGAAGAACTTCTAAATCATTGA 675 0.363 MVKSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPVSDNNPIPNDNNNNNNNNQKLFASSSSSSNSTTTTNTSLSAILSAKLRKCCKSPSPSLTCLRLDTENSHFGVWQKRAGPRSDSSWIMMVELERKKKEQEEGEIVPNSNSDILPPIVNDNSENVVKPEEEEEDEEEERNDDNNGLDEEQRIALQMIEELLNH 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00270 224 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Vivi5g00270 224 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Vivi5g00270 224 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Vivi5g00270 224 MobiDBLite consensus disorder prediction 187 204 - -
Vivi5g00270 224 MobiDBLite consensus disorder prediction 158 211 - -
Vivi5g00270 224 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Vivi5g00270 224 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 183 - -
Vivi5g00270 224 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Vivi5g00270 224 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Vivi5g00270 224 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Vivi5g00270 224 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Vivi5g00270 224 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Vivi5g00270 224 MobiDBLite consensus disorder prediction 62 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00270 Vivi-Chr5 3385786 3387569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00270 1 223 AP2-EREBP Transcription Factor Family AT1G15360 60.538 7.39e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi5g00270 AP2 1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00270 - - gmx:100796962 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g00270 5 3385786 3387569 Vivi5g00270 5 3385786 3387569 ECH