Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00269 ATGGCTCAAATTCATCTTCATGGTACTCTTCATGCTACCATCTATGAGGTTGATCAGCTTAAGGCTGGTGGTGGTGGACATTTTTTGAACAAGATCAGGCAAAACATTGAGGAGTCTGTTGGTATTGGAAAGGGAGTTACTAAACTCTACGCTTCTATTGATTTGGAGAAGGCGAGAGTGGGAAGGACTAGAATTATCGAAAACGAACATACTAATCCTAAATGGTACGAGTCTTTTCACATTTACTGTGCTCATTTGGCTTCCAATATCATATTCACTGTGAAAGATGATAATCCTATTGGAGCGACTTTAATCGGAAGAGCGTATGTGCCTGTCGAGGAGGTCTTGGGTGGTGAGGAAATAGATAGGTGGGTGGAAATTTTGGATGAGGGAAAAAATCCGATACCCGAGGGTTCGAAGATTCATGTGAAGCTGCAATATTTTGATGTCACGAAAGATCCTAGCTGGGCTCGAGGCATTCATAGTACTAAATTCCCTGGAGTTCCTTATACTTTCTTCGCGCAGAGGCAAGGATGCAAGGTATCTCTTTACCAAGATGCTCATGTTCCGGATAATTTCGTCCCTAAAATATCACTTTCGGGCGGTAAAAATTATGAACCTCATAGGTGTTGGGAGGATATTTTTGATGCAATCACTAATGCGAAACACTTGATCTACATTACTGGTTGGTCTGTTTATACTGAAATTTCGTTGGTGAGGGACTCTAGGAGACCAAAGGCTGGGGGAGACGTAACACTTGGTGAGCTTCTCAAGAAAAAAGCGAGTGAAGGTGTTCGGGTTTTGATGCTTGTTTGGGATGATAGAACCTCGGTTAATTTGTTGAAAAAGGATGGATTGATGGCTACTCATGATGAAGAAACCGCAAAGTTCTTCGAAGGCACTGATGTTAATTGTGTCCTATGCCCCCGCAATCCTGATGGTGGTGGTAGCATTGTTCAAGATTTACAAGTTTCCACCATGTTTACTCATCATCAGAAGATTGTGGTGGTCGACAGTGAACTACCTGGAAGAGGGTCAGATAAGCGAAGAATTGTTAGTTTTGTTGGGGGTATCGATCTTTGTGATGGAAGATATGATACTGCGTTCCACTCACTTTTCAGAACTCTTGACACGGCACACCATGATGACTTTCATCAACCTAACTTTCCCGGTGCTGCAATCACAAAAGGCGGTCCAAGGGAACCATGGCATGATATTCACTCTCGGCTTGAGGGACCGATCGCTTGGGATGTTTTGTTTAACTTTGAGCAGCGATGGAGGAAGCAAGGTGGGAAGGATTTACTTGTCTCTCTAAGAGAGCTTGAAGATTCTATTATCCCTCCATCCCCGGTAACGTTTCCCGATGATCAAGAGACATGGAATGTTCAGCTGTTTCGATCTATTGACGGTGGAGCAGCTTTCGGGTTCCCAGAGACTCCTGAAGAGGCTGCAAGAGCTGGGCTTGTTAGTGGAAAGGATAATATCATCGATCGTAGCATTCAAGATGCTTACATTAATGCTATTCGACGCGCAAAGAACTTTATCTATATCGAAAATCAGTATTTCCTCGGAAGCTCTTTTGTTTGGAGTTCCGGGGATATTAAGCCTGAAGATATTGGTGCTTTGCATGTAATCCCAAAAGAACTTTCACTTAAGATTATTAGTAAGATTGAAGCCGAGGAAAGGTTCACAGTGTACGTTGTCGTCCCAATGTGGCCAGAAGGTGTTCCGGAAAGTGCGTCGGTTCAAGCAATATTGGATTGGCAGAGGAGAACAATGGAGATGATGTACAAGGATATCGTTCTGGCGCTTAGGGCCAAGGGAATTGAGGAAGATCCTCGAAAATATTTGACGTTCTTCTGCCTTGGTAATCGGGAAGTAAAGAAACAAGGAGAGTACGAGCCTTCTGAAAAACCAGAACCCGATTCAGATTATGAGAGAGCCCAACAGGCCCGCCGTTTCATGATCTATGTTCATACCAAGATGATGATAGTCGATGACGAATACATAATCGTTGGATCGGCCAACATCAACCAAAGATCAATGGACGGTGCGAGGGACTCTGAGATAGCAATGGGAGGTTATCAGCCCCACCATTTGGCTACAAGACAGCCGGCGCGTGGTCAAGTCCACGGTTTCCGCATGTCATTATGGTACGAGCACCTTGGCATGCTTCATGAATCATTCCTCCATCCAGAAAGTGAAGAATGTATCACTAAGGTGAACCAGATTGCTGACAAATATTGGGATCTTTATTCCAACGATACGCTCGAGCACGATCTTCCGGGCCACTTGCTTCGCTACCCGATTGGAGTTTCAAGTGAAGGAGATGTCACAGAGCTGCCAGGATGTGAATTCTTCCCCGACACCAAGGCTCGGATTCTCGGAGCCAAAGCTGATTATCTCCCTCCTATCCTCACTACTTAG 2427 0.4458 MAQIHLHGTLHATIYEVDQLKAGGGGHFLNKIRQNIEESVGIGKGVTKLYASIDLEKARVGRTRIIENEHTNPKWYESFHIYCAHLASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEIDRWVEILDEGKNPIPEGSKIHVKLQYFDVTKDPSWARGIHSTKFPGVPYTFFAQRQGCKVSLYQDAHVPDNFVPKISLSGGKNYEPHRCWEDIFDAITNAKHLIYITGWSVYTEISLVRDSRRPKAGGDVTLGELLKKKASEGVRVLMLVWDDRTSVNLLKKDGLMATHDEETAKFFEGTDVNCVLCPRNPDGGGSIVQDLQVSTMFTHHQKIVVVDSELPGRGSDKRRIVSFVGGIDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFPGAAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDLLVSLRELEDSIIPPSPVTFPDDQETWNVQLFRSIDGGAAFGFPETPEEAARAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFVWSSGDIKPEDIGALHVIPKELSLKIISKIEAEERFTVYVVVPMWPEGVPESASVQAILDWQRRTMEMMYKDIVLALRAKGIEEDPRKYLTFFCLGNREVKKQGEYEPSEKPEPDSDYERAQQARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGGYQPHHLATRQPARGQVHGFRMSLWYEHLGMLHESFLHPESEECITKVNQIADKYWDLYSNDTLEHDLPGHLLRYPIGVSSEGDVTELPGCEFFPDTKARILGAKADYLPPILTT 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00269 808 Gene3D Endonuclease Chain A 477 702 - -
Vivi5g00269 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 326 364 IPR001736 GO:0003824
Vivi5g00269 808 PIRSF PLD_plant 1 808 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vivi5g00269 808 SMART pld_4 654 681 IPR001736 GO:0003824
Vivi5g00269 808 SMART pld_4 326 364 IPR001736 GO:0003824
Vivi5g00269 808 CDD PLDc_pPLDalpha_2 492 701 - -
Vivi5g00269 808 FunFam Phospholipase D 467 700 - -
Vivi5g00269 808 SMART C2_3c 9 124 IPR000008 -
Vivi5g00269 808 ProSiteProfiles C2 domain profile. 1 125 IPR000008 -
Vivi5g00269 808 FunFam Phospholipase D delta 201 445 - -
Vivi5g00269 808 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 150 IPR035892 -
Vivi5g00269 808 PANTHER PHOSPHOLIPASE D 5 796 IPR015679 -
Vivi5g00269 808 Pfam Phospholipase D Active site motif 326 364 IPR001736 GO:0003824
Vivi5g00269 808 Pfam Phospholipase D Active site motif 655 681 IPR001736 GO:0003824
Vivi5g00269 808 Pfam C2 domain 9 127 IPR000008 -
Vivi5g00269 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 654 681 IPR001736 GO:0003824
Vivi5g00269 808 SUPERFAMILY Phospholipase D/nuclease 151 441 - -
Vivi5g00269 808 Gene3D C2 domain 6 158 IPR035892 -
Vivi5g00269 808 Pfam Phospholipase D C terminal 727 798 IPR024632 -
Vivi5g00269 808 SUPERFAMILY Phospholipase D/nuclease 452 738 - -
Vivi5g00269 808 Gene3D Endonuclease Chain A 199 444 - -
Vivi5g00269 808 CDD C2_plant_PLD 2 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00269 Vivi-Chr5 3361578 3365517 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00269 1 808 Phospholipase D Gene Family (Wang group) AT3G15730 81.852 0.0 1404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00269 K01115 - gmx:100786410 1524.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g00269 5 3361578 3365517 Vivi2g07700 2 224574336 224578341 ECH
Vivi3g01335 3 21774641 21777711 Vivi5g00269 5 3361578 3365517 ECH
Vivi5g00269 5 3361578 3365517 Vivi5g00269 5 3361578 3365517 ECH
Vivi2g07700 2 224574336 224578341 Vivi5g00269 5 3361578 3365517 PCT