Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00268 ATGCTTCATTGTCACTGCTCTTTTCTCGGATCTATCTTTCACCCTTTGGTTTTTTTCTTCTTCCTCTTCACATTCTCTTCACCATCAAAAGTGAAAATGGCTCAAATTCATCTTCATGGTACTCTTCATGCTACCATCTATGAGGTTGATCAGCTTAAGGCTGGTGGTGGTGGACATTTTTTGAACAAGATCAGGCAAAACATTGAGGAGTCTGTTGGTATTGGAAAGGGAGTTACTAAACTCTACGCTTCTATTGATTTGGAGAAGGCGAGAGTGGGAAGGACTAGAATTATCGAAAACGAACATACTAATCCTAAATGGTACGAGTCTTTTCACATTTACTGTGCTCATTTGGCTTCCAATATCATATTCACTGTGAAAGATGATAATCCTATTGGAGCGACTTTAATCGGAAGAGCGTATGTGCCTGTCGAGGAGGTCTTGGGTGGTGAGGAAATAGATAGGTGGGTGGAAATTTTGGATGAGGGAAAAAATCCGATACCCGAGGGTTCGAAGATTCATGTGAAGCTGCAATATTTTGATGTCACGAAAGATCCTAGCTGGGCTCGAGGCATTCATAGTACTAAATTCCCTGGAGTTCCTTATACTTTCTTCGCGCAGAGGCAAGGATGCAAGGTATCTCTTTACCAAGATGCTCATGTTCCGGATAATTTCGTCCCTAAAATATCACTTTCGGGCGGTAAAAATTATGAACCTCATAGGTGTTGGGAGGATATTTTTGATGCAATCACTAATGCGAAACACTTGATCTACATTACTGGTTGGTCTGTTTATACTGAAATTTCGTTGGTGAGGGACTCTAGGAGACCAAAGGCTGGGGGAGACGTAACACTTGGTGAGCTTCTCAAGAAAAAAGCGAGTGAAGGTGTTCGGGTTTTGATGCTTGTTTGGGATGATAGAACCTCGGTTAATTTGTTGAAAAAGGATGGATTGATGGCTACTCATGATGAAGAAACCGCAAAGTTCTTCGAAGGCACTGATGTTAATTGTGTCCTATGCCCCCGCAATCCTGATGGTGGTGGTAGCATTGTTCAAGATTTACAAGTTTCCACCATGTTTACTCATCATCAGAAGATTGTGGTGGTCGACAGTGAACTACCTGGAAGAGGGTCAGATAAGCGAAGAATTGTTAGTTTTGTTGGGGGTATCGATCTTTGTGATGGAAGATATGATACTGCGTTCCACTCACTTTTCAGAACTCTTGACACGGCACACCATGATGACTTTCATCAACCTAACTTTCCCGGTGCTGCAATCACAAAAGGCGGTCCAAGGGAACCATGGCATGATATTCACTCTCGGCTTGAGGGACCGATCGCTTGGGATGTTTTGTTTAACTTTGAGCAGCGATGGAGGAAGCAAGGTGGGAAGGATTTACTTGTCTCTCTAAGAGAGCTTGAAGATTCTATTATCCCTCCATCCCCGGTAACGTTTCCCGATGATCAAGAGACATGGAATGTTCAGCTGTTTCGATCTATTGACGGTGGAGCAGCTTTCGGGTTCCCAGAGACTCCTGAAGAGGCTGCAAGAGCTGGGCTTGTTAGTGGAAAGGATAATATCATCGATCGTAGCATTCAAGATGCTTACATTAATGCTATTCGACGCGCAAAGAACTTTATCTATATCGAAAATCAGTATTTCCTCGGAAGCTCTTTTGTTTGGAGTTCCGGGGATATTAAGCCTGAAGATATTGGTGCTTTGCATGTAATCCCAAAAGAACTTTCACTTAAGATTATTAGTAAGATTGAAGCCGAGGAAAGGTTCACAGTGTACGTTGTCGTCCCAATGTGGCCAGAAGGTGTTCCGGAAAGTGCGTCGGTTCAAGCAATATTGGATTGGCAGAGGAGAACAATGGAGATGATGTACAAGGATATCGTTCTGGCGCTTAGGGCCAAGGGAATTGAGGAAGATCCTCGAAAATATTTGACGTTCTTCTGCCTTGGTAATCGGGAAGTAAAGAAACAAGGAGAGTACGAGCCTTCTGAAAAACCAGAACCCGATTCAGATTATGAGAGAGCCCAACAGGCCCGCCGTTTCATGATCTATGTTCATACCAAGATGATGATAGTCGATGACGAATACATAATCGTTGGATCGGCCAACATCAACCAAAGATCAATGGACGGTGCGAGGGACTCTGAGATAGCAATGGGAGGTTATCAGCCCCACCATTTGGCTACAAGACAGCCGGCGCGTGGTCAAGTCCACGGTTTCCGCATGTCATTATGGTACGAGCACCTTGGCATGCTTCATGAATCATTCCTCCATCCAGAAAGTGAAGAATGTATCACTAAGGTGAACCAGATTGCTGACAAATATTGGGATCTTTATTCCAACGATACGCTCGAGCACGATCTTCCGGGCCACTTGCTTCGCTACCCGATTGGAGTTTCAAGTGAAGGAGATGTCACAGAGCTGCCAGGATGTGAATTCTTCCCCGACACCAAGGCTCGGATTCTCGGAGCCAAAGCTGATTATCTCCCTCCTATCCTCACTACTTAG 2523 0.4431 MLHCHCSFLGSIFHPLVFFFFLFTFSSPSKVKMAQIHLHGTLHATIYEVDQLKAGGGGHFLNKIRQNIEESVGIGKGVTKLYASIDLEKARVGRTRIIENEHTNPKWYESFHIYCAHLASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEIDRWVEILDEGKNPIPEGSKIHVKLQYFDVTKDPSWARGIHSTKFPGVPYTFFAQRQGCKVSLYQDAHVPDNFVPKISLSGGKNYEPHRCWEDIFDAITNAKHLIYITGWSVYTEISLVRDSRRPKAGGDVTLGELLKKKASEGVRVLMLVWDDRTSVNLLKKDGLMATHDEETAKFFEGTDVNCVLCPRNPDGGGSIVQDLQVSTMFTHHQKIVVVDSELPGRGSDKRRIVSFVGGIDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFPGAAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDLLVSLRELEDSIIPPSPVTFPDDQETWNVQLFRSIDGGAAFGFPETPEEAARAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFVWSSGDIKPEDIGALHVIPKELSLKIISKIEAEERFTVYVVVPMWPEGVPESASVQAILDWQRRTMEMMYKDIVLALRAKGIEEDPRKYLTFFCLGNREVKKQGEYEPSEKPEPDSDYERAQQARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGGYQPHHLATRQPARGQVHGFRMSLWYEHLGMLHESFLHPESEECITKVNQIADKYWDLYSNDTLEHDLPGHLLRYPIGVSSEGDVTELPGCEFFPDTKARILGAKADYLPPILTT 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00268 840 CDD C2_plant_PLD 34 180 - -
Vivi5g00268 840 PIRSF PLD_plant 27 840 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vivi5g00268 840 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 358 396 IPR001736 GO:0003824
Vivi5g00268 840 CDD PLDc_pPLDalpha_2 524 733 - -
Vivi5g00268 840 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 686 713 IPR001736 GO:0003824
Vivi5g00268 840 ProSiteProfiles C2 domain profile. 27 157 IPR000008 -
Vivi5g00268 840 SUPERFAMILY Phospholipase D/nuclease 515 770 - -
Vivi5g00268 840 Gene3D Endonuclease Chain A 231 476 - -
Vivi5g00268 840 FunFam Phospholipase D 499 732 - -
Vivi5g00268 840 SUPERFAMILY Phospholipase D/nuclease 183 473 - -
Vivi5g00268 840 PANTHER PHOSPHOLIPASE D 36 828 IPR015679 -
Vivi5g00268 840 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 38 182 IPR035892 -
Vivi5g00268 840 Gene3D Endonuclease Chain A 509 734 - -
Vivi5g00268 840 Pfam C2 domain 41 159 IPR000008 -
Vivi5g00268 840 FunFam Phospholipase D delta 233 477 - -
Vivi5g00268 840 Gene3D C2 domain 38 190 IPR035892 -
Vivi5g00268 840 SMART C2_3c 41 156 IPR000008 -
Vivi5g00268 840 Pfam Phospholipase D C terminal 759 830 IPR024632 -
Vivi5g00268 840 Pfam Phospholipase D Active site motif 358 396 IPR001736 GO:0003824
Vivi5g00268 840 Pfam Phospholipase D Active site motif 687 713 IPR001736 GO:0003824
Vivi5g00268 840 SMART pld_4 358 396 IPR001736 GO:0003824
Vivi5g00268 840 SMART pld_4 686 713 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00268 Vivi-Chr5 3361578 3365579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00268 33 840 Phospholipase D Gene Family (Wang group) AT3G15730 81.852 0.0 1404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00268 K01115 - gmx:100786410 1524.22