Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00238 ATGGCAGCGAAGTCTTCCCCTCCCTTCTCCTTTAGACTCCCAAACATAGCTTTAGGCAATTCTCATGGTATATTATACCTTCACCACCAAGCAACGCCTCGTATCATCCATAGGGGTATCGAACCAAGTCATGTATTGTTGGATTCGGATTTCCGAGCCTTCATTTCTGGTTTCGGGTTTGCTATGATAATCCCTGATGGGGAAACACAAGTGACTAAAGATTTTGTTAAAGGAACCATAGGCTACCTTGCACCAGAATTTATGTTAGGTAAAGTAAATGAAAGTTGTGATGTTTATAGCTTTGGCATCCTCCTTCTCGAGCTAGCTAGTGGTAGAAAACCAATTCTAGACACTAGTTCTACCATGAAGAATGCAATAGTTGATTGGGCATTGGCATTGGTTTGTGAGAAGAAATTTAGTGAAATTGTTGATCCAAAACTAAAGGGTAACTATGTGGAAGAAGAATTTAAAAGAGTTATTGTTGTTGGATTGATGTGTGCTCAAGACTTATTTGAGAAGAGACCTACCATGATTGATGTGGTGGAGCTATTGAAGGGAGAACCTAAAGCTAAGTTTTCAAATAAAGAGAGTAGTAAAATGTTTAGAAGCTATATATTATAG 621 0.3849 MAAKSSPPFSFRLPNIALGNSHGILYLHHQATPRIIHRGIEPSHVLLDSDFRAFISGFGFAMIIPDGETQVTKDFVKGTIGYLAPEFMLGKVNESCDVYSFGILLLELASGRKPILDTSSTMKNAIVDWALALVCEKKFSEIVDPKLKGNYVEEEFKRVIVVGLMCAQDLFEKRPTMIDVVELLKGEPKAKFSNKESSKMFRSYIL 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00238 206 PANTHER OS08G0249100 PROTEIN 15 196 IPR046958 -
Vivi5g00238 206 Gene3D Transferase(Phosphotransferase) domain 1 4 202 - -
Vivi5g00238 206 ProSiteProfiles Protein kinase domain profile. 1 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g00238 206 SUPERFAMILY Protein kinase-like (PK-like) 15 184 IPR011009 -
Vivi5g00238 206 Pfam Protein kinase domain 16 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g00238 206 FunFam Lectin-domain containing receptor kinase A4.3 8 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00238 Vivi-Chr5 2890090 2895118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00238 4 203 Receptor kinase-like Gene Family AT4G33430 37.379 4.56e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Vivi5g00238 Pkinase 5.4e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00238 - - gmx:100791193 269.24