Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00232 ATGGAGTTTCAATCTTGTATTATTACTCCTAATATTAACAATGAGAAACCTGATTCAGAAATTATTACTCCTATTATTAACAATGAGAAACCTGATTCAGGAACACAATCCAATAAGCGGAAGAAAAAGAAGTCTATTGTGTGGGATTACTTCACGGTGGAACCTGTTGTAGCTGGATGTGCCAGAGCTTACTGTAAACAGTGCAACAAATCGTTTTCTTATATAAGGAATTTAAAAGTAGCTGGCACAAGTAATTTGAAGAAGCACATTTCTTTCGGAATCTGTCAAGTAATGCAGCAGAAAACTCAACCGAACTCACGTCCTGTAAATGGTGTAAATGGTGGTTTGCAGGTTAATGGCATTCCGCCAAACTCACATCCTGTAAATGGTGTAAATGCTGGTTTGCAGGTTAATGGCATTCTGCCAAACTCACATCATGTAAATGGTGTAAAGGGTGGTTTGCAGGTTAATGGCACTCTACCAAAGAAAAGGCCAAGAGCTACATCTAACTATACTGGTAAAGGTATCTCATTTGATCAGGAGCGTTGCACCGATGACATTGCTAAAATGGTAATTTTACATGATTATCCTCTTGATATTGTGGAACAACCGGGTTTCATTGCTTTTGCACAGAGTCTTCAACCTCAGTTCAATCCGTTGTGTTTGAATTCTTTTGAAGGGTATTGTGTTTCTATGTACCTTAGAGAGAAGCAAAAGTTGTTAGATCTTATCTATGGGATTCCTGGACGACTCAACCTGACATTGGACGTGTGGTCATCAAACCAGACAACAGGGTATGTTATTATCAGAGGGCACTTCATTGATAGTGATTCCAACTTACATCATCCTATTCTCAGTGTTGTTACAGTGCCGTTTCTTGATTCAGATGAACTCATAAACCAATCTATAATGACCTGTTTATCTGATTGGCATTTGGAGGGTCGGGTACTTACCCTTGCATTCGATAAGTCTTTCTCAAGTGAGACCTTCAAGGTAAATTTGCGAAGCCATCTCTCTATTAATAACCCTGTGATTCTCGGTGGTCAGTTATTAAACCGGAATTGTTACGCCCGTGTTCTCAGTCGCCTTGCAGTAGATGCATTACAGGCAATGGGAGAAACTATTAGCAAAGTTCGCGAGTCTGTGAAATTCGTGAAATATTCTGAATTGCACGAAGAGAAGTTTATTGAGCTTAAGCAACAACTACAGGTACCTAGTTTGGTGAACCTATTGAATGATGATCATTATAAATGGGATACAACGTACCATATGCTTGTAGCTGCCTGGGAATTAAAGGAAGTTTTTGCTTGCTTGGATACTCGCTGTCCTGATTTCATAATGACTCTATCTATGGATGACTGGAAGCAGATTAAAACTCTTTGCACATATTTGAAACATTTGTATGATGCATCTCGCTTTTTAACCACCCAACCACATCCAACTGCAAACTTATTTTTTGCCGAAGTGTCAAAACTTCATATGGAGTTGACTATTGCAGCCTTCAGCCAGGATCTTTTTCTTAGTAGTTTGATTTTGCCTTTGCTCAAGAACTTTGATCAATATTGGAGAGATAGCTGTCTCATCTTGGCAGTTGCTGTAGCCATGGACCCAAGGCATAAAATGAAGCTTGTGGAAACCACATTTGCTAAGATATTTGGAGAGAATGCTGAGCCGTGGATTAGGATAGTCGAGGACGGCCTTCATGAACTATTCATTGAATATAATACTGAAATTCATTTTACCACAACAAATGGTGGAGAAGGGGAAGAGATTATGTTAACAGTAGAGCCATATGAAGGGCCGGTTGATGGTTCTCTTTTTGTCGATGAAGGTGAACTTTCTGACTTTGAGTTTTGTATATCTGATATGACTTGTTTGCAGCCATATAAGTCAGAATTGGATGACTATTTGGAAGAACCTCAACTGTCTGAAGAAACAGAATTTGATATTGTGAATTGGTGGAAGTTAAATCAATCGAAATATCCAACATTGTCTAGAATGGCCTCTGATATCTTGTCAATGTCAATATCTACTGTGTCTCCCGATTCTGTTTTTGACACAGGAGTCAGAAAAATGGATAATCACAGGAGTTCGTTAGAATCCCGTACACTCGAAGCCCTTATTTGTGCCAAGGATTGGTTGCAACATAATTCTATGCACAAAAATGTTTCAAATACACTTTGA 2184 0.3887 MEFQSCIITPNINNEKPDSEIITPIINNEKPDSGTQSNKRKKKKSIVWDYFTVEPVVAGCARAYCKQCNKSFSYIRNLKVAGTSNLKKHISFGICQVMQQKTQPNSRPVNGVNGGLQVNGIPPNSHPVNGVNAGLQVNGILPNSHHVNGVKGGLQVNGTLPKKRPRATSNYTGKGISFDQERCTDDIAKMVILHDYPLDIVEQPGFIAFAQSLQPQFNPLCLNSFEGYCVSMYLREKQKLLDLIYGIPGRLNLTLDVWSSNQTTGYVIIRGHFIDSDSNLHHPILSVVTVPFLDSDELINQSIMTCLSDWHLEGRVLTLAFDKSFSSETFKVNLRSHLSINNPVILGGQLLNRNCYARVLSRLAVDALQAMGETISKVRESVKFVKYSELHEEKFIELKQQLQVPSLVNLLNDDHYKWDTTYHMLVAAWELKEVFACLDTRCPDFIMTLSMDDWKQIKTLCTYLKHLYDASRFLTTQPHPTANLFFAEVSKLHMELTIAAFSQDLFLSSLILPLLKNFDQYWRDSCLILAVAVAMDPRHKMKLVETTFAKIFGENAEPWIRIVEDGLHELFIEYNTEIHFTTTNGGEGEEIMLTVEPYEGPVDGSLFVDEGELSDFEFCISDMTCLQPYKSELDDYLEEPQLSEETEFDIVNWWKLNQSKYPTLSRMASDILSMSISTVSPDSVFDTGVRKMDNHRSSLESRTLEALICAKDWLQHNSMHKNVSNTL 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00232 727 SUPERFAMILY Ribonuclease H-like 238 715 IPR012337 -
Vivi5g00232 727 PANTHER BED FINGER-RELATED 228 719 IPR045259 -
Vivi5g00232 727 SMART bed5 42 98 - -
Vivi5g00232 727 ProSiteProfiles Zinc finger BED-type profile. 42 102 IPR003656 GO:0003677
Vivi5g00232 727 SUPERFAMILY beta-beta-alpha zinc fingers 45 99 IPR036236 -
Vivi5g00232 727 Pfam hAT family C-terminal dimerisation region 632 714 IPR008906 GO:0046983
Vivi5g00232 727 Pfam Domain of unknown function (DUF4413) 476 574 IPR025525 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00232 Vivi-Chr5 2857166 2860528 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi5g00232 DUF4413 3.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00232 - - psat:127105402 1310.05