Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00218 ATGGCTCAATCTGAAGCCGTGCTGCTACAGCAGCTATTCAATTATGCAAATCAGACTTCAAACTCAGGTGTTACCGAAGATACATTAGGGTATTTGAATGCAGTAAAAGTTGCAATTCGAGATAAGAGAGAAAATAATATTCACGATTTTCTAAAAGTTTTGAAGGACTATGAAGATCATTCTATTGATATTAGAGCAAGATGTGTTGCTGCCAGATTGAAGGTCTTTCTCAGAGATCATCCCCATTTGATTTTGGAATTCAACTCTTTCGTGCCGAAGAAGAATCAAATCACAGTTTCACCCGACGATTCACGTGTATCAGATTTTGTCCATGCAGTAAAATTTACTATTCAAACTAATTTTCATGATTTTCTACGAGTTTTGAAGGATTACCGTGATCGAACAATTGATCTAAGTTCTCTTATGTCAACAGTGAAGGGGCTGCTAAAAAATTATCCCGATTTAATTTTGGAATTCAACTCTTTCATGCTCAAGAAAAATCAAATCACAGTTTCATCCGAGGATTCACGTGCATTAGATTTTATCCAGGCAGTAAAACTTACTATTCCACATAATTTTCATGATTTTCGACAAGTTTTGAACGATTACCGTGATCAAACAATTGATCTAAGTTCTCTTACTTCAACAGTGAAGGGGCTGCTAAAAAATTATCCCGATTTAATTTCGGAATTCAACTTCTTCCTTTCATCTCATAATCCCAAAGGTAATGGTCGTCATGTTGATCAACTTCCCTGGGATGTGCTTGATACCATTTGCAAAACCCTAGATTTTGAAGACCTCTTTTCGTTTTCGGGTGTTTGCAAGAATTGGAGGACTTTTCATAAATCAAATTTCGTGTCATCCCAAGAACCATTGCTTGTTCGAATGATGAGTACTACTTATACTACTGGTAATTGTCCTCACTCGTATTCCTTTATTAGCATACCCAATCAAAAAGTTTATTATTTGAAGACTATGAGAAGCTTCCAGCCTCCCAACTATGTTTTTGTTGGAGTTTCCAGCCAATATTTCATCTTGGCCCATAAAAATAAATCATTTATGCTATTCAATCCATTTACAAGAAAAAAAATGGTAATCAATGCCAACGAATCTATGTTCAATAATCTATACAAAGTCTTGCTTGCTTTTGAGAAATGGTCTGAGAAATATGTCTTGGTGGTTTTATGCAAAGAGCCTAGCCGTTTGTGTATCTATCGATCTCGATCCAATGGTTGGTTTACTTATTCAGCATTAAAACCAAAAGAGGTGGTAGTCGACTTTGTGGTTTTGAATTATAAAATATATGTTGTCACTGACAAGGCCAGCATAGGGGTACTAAACTTGAATTCTGGAAATATTCAATTTCTAAACCTCAAGAGTACTCCTCATATTGATTCCTCGAATTCCTTTAAATTGGTTAATTGTGATGAGCAACTTTTACTGTTTCATTCAATATCCTCCTATTATCGGAGGGAAGTTTACAAGATAGACTTGTCAACCATGAATTATGTTAAGATGAAAACTTTGGGTGATATTGCATTATTTTATGTTTCTTGGAGAAACTGTTGGGCATTGAGCAACCCTAAGAGAATGGGGTATGAGAGCAACCATGTGTATGAAGTTAGTAGTCCATCTCAATGTAATAAGTATGATTGGAATGATGGTTGTCCATCAAAAATATACCCATATATTCGTTATCTTAATTTCAATCTCTTTGATTGGTGTTTTAGACATGTAAAATATGAAGTGGATTATTCTTTAGTTGAATAA 1770 0.3492 MAQSEAVLLQQLFNYANQTSNSGVTEDTLGYLNAVKVAIRDKRENNIHDFLKVLKDYEDHSIDIRARCVAARLKVFLRDHPHLILEFNSFVPKKNQITVSPDDSRVSDFVHAVKFTIQTNFHDFLRVLKDYRDRTIDLSSLMSTVKGLLKNYPDLILEFNSFMLKKNQITVSSEDSRALDFIQAVKLTIPHNFHDFRQVLNDYRDQTIDLSSLTSTVKGLLKNYPDLISEFNFFLSSHNPKGNGRHVDQLPWDVLDTICKTLDFEDLFSFSGVCKNWRTFHKSNFVSSQEPLLVRMMSTTYTTGNCPHSYSFISIPNQKVYYLKTMRSFQPPNYVFVGVSSQYFILAHKNKSFMLFNPFTRKKMVINANESMFNNLYKVLLAFEKWSEKYVLVVLCKEPSRLCIYRSRSNGWFTYSALKPKEVVVDFVVLNYKIYVVTDKASIGVLNLNSGNIQFLNLKSTPHIDSSNSFKLVNCDEQLLLFHSISSYYRREVYKIDLSTMNYVKMKTLGDIALFYVSWRNCWALSNPKRMGYESNHVYEVSSPSQCNKYDWNDGCPSKIYPYIRYLNFNLFDWCFRHVKYEVDYSLVE 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00218 589 Pfam F-box domain 248 279 IPR001810 GO:0005515
Vivi5g00218 589 ProSiteProfiles PAH domain profile. 20 94 IPR003822 GO:0006355
Vivi5g00218 589 PANTHER OS09G0392200 PROTEIN 237 541 IPR044619 -
Vivi5g00218 589 Gene3D Paired amphipathic helix 177 235 IPR036600 GO:0006355
Vivi5g00218 589 Gene3D Paired amphipathic helix 27 92 IPR036600 GO:0006355
Vivi5g00218 589 Gene3D Paired amphipathic helix 107 163 IPR036600 GO:0006355
Vivi5g00218 589 SUPERFAMILY PAH2 domain 102 163 IPR036600 GO:0006355
Vivi5g00218 589 SUPERFAMILY PAH2 domain 172 236 IPR036600 GO:0006355
Vivi5g00218 589 Pfam Paired amphipathic helix repeat 193 235 IPR003822 GO:0006355
Vivi5g00218 589 Pfam Paired amphipathic helix repeat 49 90 IPR003822 GO:0006355
Vivi5g00218 589 Pfam Paired amphipathic helix repeat 122 162 IPR003822 GO:0006355
Vivi5g00218 589 Gene3D - 241 288 - -
Vivi5g00218 589 ProSiteProfiles PAH domain profile. 169 238 IPR003822 GO:0006355
Vivi5g00218 589 SUPERFAMILY F-box domain 237 288 IPR036047 GO:0005515
Vivi5g00218 589 ProSiteProfiles PAH domain profile. 95 166 IPR003822 GO:0006355
Vivi5g00218 589 SUPERFAMILY PAH2 domain 25 93 IPR036600 GO:0006355
Vivi5g00218 589 CDD F-box_SF 248 278 - -
Vivi5g00218 589 SMART fbox_2 250 290 IPR001810 GO:0005515
Vivi5g00218 589 ProSiteProfiles F-box domain profile. 244 296 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00218 Vivi-Chr5 2721883 2723732 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00218 114 186 WRKY Transcription Factor Family AT4G12020 35.616 7.42e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi5g00218 PAH 2.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00218 - - vvo:131635782 679.093