Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00203 ATGGAGGAGTCAGGAGAAAATTGGCCTTGTGATTCTGATTTGGAAATTTGTGATGATGTTATTTTCGAAGATGGAGATTCTGAATCATATGATGATGAGTTTGAAGATTCCACCGACAGAAATGGAAGATATGAGAGGGAACTCAGAGAGAAAATGTTGACACTTTCAGCCACCATACCTGGCTTGAAGAAGATGGACGACAATTCGATCCTAGACAAAGCTAGACAGTATGTGAAACAACTTCAAGAACGTGTGAAAGAGTTGGAAGAAGTTAGATCCAACAATGTTGATAGCGATAATTGTGGAACAAGTATTGATATTCTCCCAGATGTGAAAGCAAGAGTGTTACAAAAGCAAGTGCTTATCACAATCCACTGTGAGAAACAAAAGAGTGCAATGCTCAAAATACTTACTCATCTTCAAAATCTTCATCTTCTAGTAATTTACAACAGTGTCTTGCAATTTGGAATATCCAATTTTGATATTACCATCGTTGCTCAGATGGATGATGGATACAACATTACAGTGGATGAACTAGTGAAAACACTTAGAAGAGTGATCTTGACACAATAG 573 0.3717 MEESGENWPCDSDLEICDDVIFEDGDSESYDDEFEDSTDRNGRYERELREKMLTLSATIPGLKKMDDNSILDKARQYVKQLQERVKELEEVRSNNVDSDNCGTSIDILPDVKARVLQKQVLITIHCEKQKSAMLKILTHLQNLHLLVIYNSVLQFGISNFDITIVAQMDDGYNITVDELVKTLRRVILTQ 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00203 190 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 32 81 IPR011598 GO:0046983
Vivi5g00203 190 Gene3D - 37 95 IPR036638 GO:0046983
Vivi5g00203 190 Coils Coil 71 98 - -
Vivi5g00203 190 PANTHER BHLH TRANSCRIPTION FACTOR 47 188 - -
Vivi5g00203 190 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 92 IPR036638 GO:0046983
Vivi5g00203 190 SMART finulus 42 87 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00203 Vivi-Chr5 2450544 2452446 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00203 45 187 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.462 8.07e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00203 - - tpra:123921504 201.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07770 2 225538922 225540070 Vivi5g00203 5 2450544 2452446 PCT
Vivi5g00203 5 2450544 2452446 Vivi2g07771 2 225562927 225573595 PCT