Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00202 ATGGAGGAATCGGGCGAAAATTGGCCTTCTGATTCTGATTTGGGAAAATGGAATGATGCCATTTTTGAAGATGGAGAATCTGAATATGTGTGGGATGATGAGAGTAAACTCAAAGAAAGATTCTTGGCACTTTCAGAAGCCATAGGTTCAAAGAAGATGGACCGCAATTCAATTCTAGTCAAAGCAAGACAATATGTGAAAAAACTTCAAAAGCGTGTAAAAGAGTTAGAACAAGATGTTGAATCCAATGTTTCTAGCAACAACATTTGTCGAACAAATGCTAATATTCTTCCCGACGTGAGAGCCAAAGTATTAGAAAAAGAAGTTTTAGTCACAATCCATTGTGAGAAACAAAAGAATGTTGTGCTCAAAATACTAACCCACCTTGAAAATCTTCATCTTTTAGTAGTGAGTAGTAATGTCTTGCAATTTGGAACATTCACCATTCACATCACCATTGTTGCCCAGATGTGTGATGGATGCAGCATTACAATGGATGAATTAGTGAAAAGTCTCATAATAGTGATCATGGCAAAGTAG 540 0.3667 MEESGENWPSDSDLGKWNDAIFEDGESEYVWDDESKLKERFLALSEAIGSKKMDRNSILVKARQYVKKLQKRVKELEQDVESNVSSNNICRTNANILPDVRAKVLEKEVLVTIHCEKQKNVVLKILTHLENLHLLVVSSNVLQFGTFTIHITIVAQMCDGCSITMDELVKSLIIVIMAK 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00202 179 Gene3D - 34 91 IPR036638 GO:0046983
Vivi5g00202 179 Coils Coil 59 86 - -
Vivi5g00202 179 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 36 96 IPR036638 GO:0046983
Vivi5g00202 179 PANTHER BHLH TRANSCRIPTION FACTOR 35 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00202 Vivi-Chr5 2436672 2438825 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00202 36 172 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.849 1.77e-20 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00202 - - psat:127105380 199.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07771 2 225562927 225573595 Vivi5g00202 5 2436672 2438825 PCT