Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00201 ATGGAGGAATCTGGAGAAAATTGGCCTTCTGATTGTGATATGGGTTCATGTGTTGACGTCATTTTTGATGATGGTGATGATTTAAATGAGAAGGATTTATCAGAGAAGATGCTGGAACTTTCAGCCACCATTCCTGACTCGAATAAGATTGACAATGCTTCTATCTTGGACAAGGCTAGAAACTATGTGAAACAACTTCAAGAACGTGTTAAAGAGCTAGAAAAAGATGCTGAATCCAAAAAAAATTGTAGCAATAATAATGGAATAAGTACTGATAGTCTTCCTGAGGTCAAAGCAATAGTGTCAAAAATGGAAGTTCTCATCAAAATCCATTGTGAGAAACAAAATGGGGTCTTGGTTAAAATATTGACACACATTGAAAATCTTCATCTTTCAGTAAAAAGTAGTAGTGTATTGGAATTTGGGAAATCCACATTTGGTATAACCATTGTTGCTCAGATGGGTGATGGATATAATATTACGGTGGATGACCTAGTGAAAAGTCTCATAACGGCGATCTCAACAAAATAG 531 0.3578 MEESGENWPSDCDMGSCVDVIFDDGDDLNEKDLSEKMLELSATIPDSNKIDNASILDKARNYVKQLQERVKELEKDAESKKNCSNNNGISTDSLPEVKAIVSKMEVLIKIHCEKQNGVLVKILTHIENLHLSVKSSSVLEFGKSTFGITIVAQMGDGYNITVDDLVKSLITAISTK 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00201 176 Coils Coil 56 83 - -
Vivi5g00201 176 PANTHER BHLH TRANSCRIPTION FACTOR 31 173 - -
Vivi5g00201 176 SMART finulus 27 72 IPR011598 GO:0046983
Vivi5g00201 176 Pfam Helix-loop-helix DNA-binding domain 33 67 IPR011598 GO:0046983
Vivi5g00201 176 Gene3D - 30 91 IPR036638 GO:0046983
Vivi5g00201 176 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 32 79 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00201 Vivi-Chr5 2423006 2434159 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00201 33 174 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.650 1.10e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00201 - - tpra:123921504 195.282