Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00200 ATGGAAGCGTCATGGGAAGATTTTCATCTTGACATGGATTTGGATTGCGGTGATGATTACTTCATAGACAACATTAACATTGACGGTGACGATTTTCTTAGAGAGATTCTATTAGAAATACCACAAAGTTCAGATTCAGTAGTGTCTGAATCTGAACAACAACACCAACAAGAACAAGAACAATCCAAAAATGTTACTGGTCGATGTTATTTACCAAAGACATTTATTTTGTCTTTTGATGACTCAACTATGATACCTGCTACACGTGAAGCATGTGTCGATTTGGAAGGTAAACGTGATTCTAAGAATAAACGGAAACGTGAAAGTGGTGAAAAGAGTGAAAAGATGAAAAGGAATGAAGAAAAAGTAGTGAAGAGAGGTAGAAACAGTTCTCAGTGTGTTGATCATATAATAGCAGAGAGAAAACGGAGACAAGAATTGACCGAAAAATTCATTGCTCTTTCAGCAACTATTCCTGGATTGAGCAAGACAGACAAAGCCTCCATACTTAGAGCAGCAATTGATTACGTGAAACATCTTCAACAACGTGTTCATGACCTAGAAAAACAAGACAAAAATGTTGGTGTCACGTCAAATATGGTCCTTGATAAACCTAATCTATATGGAATTATTGACAATAATGAAGACAAAAATTTTGGTCAAACAAGTAGTGATGATGATGATCATGATGATTGTAATAATAATAATAATAATAATAATAATATCCTCCCTGAGATTGAAGCAAGAGTTATGGGAAAGGAAGTGCTTGTTGAAATTCATTGTGAGAAACAAATTGGAATTGAGCTTAAAGTACTAAAACACATTGAAAATCTTGAGCTTTTTGTTACTGGTAGCAGTGTCTTGTCATTTGGGAAATCAGATCTTTCCATTACTATTATTGCTCAGATGGGTGAAGGATACAAAGTGAGAGTGGAAGATCTTGTGAAAAGTGTTAGGCGAGTGATTTTGAAACCTGAAATTGGATGTGAAGTTGATCTATTCTAG 1005 0.3493 MEASWEDFHLDMDLDCGDDYFIDNINIDGDDFLREILLEIPQSSDSVVSESEQQHQQEQEQSKNVTGRCYLPKTFILSFDDSTMIPATREACVDLEGKRDSKNKRKRESGEKSEKMKRNEEKVVKRGRNSSQCVDHIIAERKRRQELTEKFIALSATIPGLSKTDKASILRAAIDYVKHLQQRVHDLEKQDKNVGVTSNMVLDKPNLYGIIDNNEDKNFGQTSSDDDDHDDCNNNNNNNNNILPEIEARVMGKEVLVEIHCEKQIGIELKVLKHIENLELFVTGSSVLSFGKSDLSITIIAQMGEGYKVRVEDLVKSVRRVILKPEIGCEVDLF 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00200 334 MobiDBLite consensus disorder prediction 97 129 - -
Vivi5g00200 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
Vivi5g00200 334 PANTHER BHLH TRANSCRIPTION FACTOR 50 323 - -
Vivi5g00200 334 SMART finulus 137 186 IPR011598 GO:0046983
Vivi5g00200 334 Coils Coil 170 190 - -
Vivi5g00200 334 Gene3D - 130 200 IPR036638 GO:0046983
Vivi5g00200 334 Pfam Helix-loop-helix DNA-binding domain 133 181 IPR011598 GO:0046983
Vivi5g00200 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 191 IPR036638 GO:0046983
Vivi5g00200 334 MobiDBLite consensus disorder prediction 212 239 - -
Vivi5g00200 334 MobiDBLite consensus disorder prediction 219 233 - -
Vivi5g00200 334 MobiDBLite consensus disorder prediction 44 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00200 Vivi-Chr5 2417398 2419395 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00200 127 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 43.878 1.65e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi5g00200 HLH 5.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00200 - - psat:127105379 443.736