Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00199 ATGGAGGAGTCAGGAGAAAATTGGTCTTCTGATTTGGAAAAATGTGAAGAGGTCATTTTGGAAGATGGAGATTATGATTCTTTGTGTGATGAGACTGAAGATCGGTTCAATAGAAAGAAGAGAAATGAGAGGGAACTTGAAGAAAGATTGTTGGAACTTTCAGCAGCCATAGGCTTGAAGAAGAGAAAACTAGACAAAGCTTCAATCTTAGAGAAAGCTAAACACTATGTGAAAAAACTTCAAGATCGCGTAAAAGAGTTAGAACAAGAAGTTGGATCCAACAATTATGGAACAAGCACTAGTATTCTTCCCGACGTGAAAACCAAAATGTTACAAAAGGAAATTCTCCTCACAATCCATTGTGAGAAACAAAAGAGTGTCATGCTAAAAATACTTACCAAGCTAAAAAATCTTCATCTTTCAATAGTGAGTAGCAGTGTTTTGCAATTTGGAAAATCCACCTTTGACATCACCATCGTTGCTCAGATGGGTGATGGATACAACATTACAATGGATGAACTAGTGAAGACCCTCACAATAGTGATCATGACAAAGTAG 558 0.3692 MEESGENWSSDLEKCEEVILEDGDYDSLCDETEDRFNRKKRNERELEERLLELSAAIGLKKRKLDKASILEKAKHYVKKLQDRVKELEQEVGSNNYGTSTSILPDVKTKMLQKEILLTIHCEKQKSVMLKILTKLKNLHLSIVSSSVLQFGKSTFDITIVAQMGDGYNITMDELVKTLTIVIMTK 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00199 185 Gene3D - 34 97 IPR036638 GO:0046983
Vivi5g00199 185 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 39 94 IPR036638 GO:0046983
Vivi5g00199 185 PANTHER BHLH TRANSCRIPTION FACTOR 38 183 - -
Vivi5g00199 185 Coils Coil 70 90 - -
Vivi5g00199 185 SMART finulus 40 86 IPR011598 GO:0046983
Vivi5g00199 185 Coils Coil 29 56 - -
Vivi5g00199 185 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 30 80 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00199 Vivi-Chr5 2410324 2412863 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00199 39 178 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.928 5.87e-21 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00199 - - psat:127105380 230.335