Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00198 ATGGAAGCATCATGGGAAGATTTTCATCTTGACATGGATTTGGATTGCGGTGATGATTACTTCATAGACAACGTTAACATTGATGGTGACGATTTTCTTAGAGAGATTCTATTAGAAACACCACAAAGTTCAGATTCAGTTGTGTCCCAACAACAACAACACCAACAAGAACAAGAACAATCCAAAAATGTTAATGGTCGATGTTATTTACCAAAGACATTCATTTTGTCTTTTGATGACTCAACTATAATACCTGCAACACGTGAAGCATGTGTCGATTTGGAAGGTAAACGTGATTCTAAGAATAAGCGGAAACGTGAAAGTGGTGAAATGATGAAAAGAAATGAAGAAAAAGTAGTGAAGAGAGGTAGAAGCAGTTCTCAGTGTGTTGATCATATATTAGCAGAGAGAAAACGGAGACAAGAATTGACCGAAAAATTCATCGCACTTTCAGCAACCATTCCTGGATTGAGCAAGACAGACAAAGCTTCCATACTTAGAGCAGCAATTGACTATGTGAAACATCTTCAACAACGTGTTCATGAGTTAGAGAAACAAGACAAAAATGTTGGTGTCACATCAATGATGGTCCATGACAAACCTAATATTTGTGGAATTATTAACAATAATGAAGACAAAAATTGTGGTCAAACAAGTAGTGATGATGATGATCATGATGATTGTAATAATAATAATAATAATAATAATAATATCCTCCCTGAGATTGAAGCAAGAGTTATGGGAAAGGAAGTGCTTATTGAAATTCATTGTGAGAAACAAATTGGAATTGAGCTCAAAATACTTAAACATATTGAAAATCTTCAGCTTTTTGTTAGAGGTAGTAGTGTCTTGCAATTTGGAAAATCAGATCTTTCCATTACTATTATTGCTCAGATGGATGAGGGATACAAAATGACAATGTGTGATTTAGTGAAAAGTCTTAGGCAAATGCTTATGAAACCTCAAATGGGGTGTCAAAGTGATCTGTTCTAG 993 0.3474 MEASWEDFHLDMDLDCGDDYFIDNVNIDGDDFLREILLETPQSSDSVVSQQQQHQQEQEQSKNVNGRCYLPKTFILSFDDSTIIPATREACVDLEGKRDSKNKRKRESGEMMKRNEEKVVKRGRSSSQCVDHILAERKRRQELTEKFIALSATIPGLSKTDKASILRAAIDYVKHLQQRVHELEKQDKNVGVTSMMVHDKPNICGIINNNEDKNCGQTSSDDDDHDDCNNNNNNNNNILPEIEARVMGKEVLIEIHCEKQIGIELKILKHIENLQLFVRGSSVLQFGKSDLSITIIAQMDEGYKMTMCDLVKSLRQMLMKPQMGCQSDLF 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00198 330 Gene3D - 126 196 IPR036638 GO:0046983
Vivi5g00198 330 PANTHER BHLH TRANSCRIPTION FACTOR 43 320 - -
Vivi5g00198 330 Coils Coil 166 186 - -
Vivi5g00198 330 MobiDBLite consensus disorder prediction 43 63 - -
Vivi5g00198 330 SMART finulus 133 182 IPR011598 GO:0046983
Vivi5g00198 330 MobiDBLite consensus disorder prediction 215 234 - -
Vivi5g00198 330 Pfam Helix-loop-helix DNA-binding domain 129 177 IPR011598 GO:0046983
Vivi5g00198 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 187 IPR036638 GO:0046983
Vivi5g00198 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 176 IPR011598 GO:0046983
Vivi5g00198 330 MobiDBLite consensus disorder prediction 95 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00198 Vivi-Chr5 2381816 2383604 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00198 75 318 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.996 1.68e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi5g00198 HLH 9.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00198 - - psat:127105379 455.677