Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00197 ATGAACATTGAAAACTTCTCATACAACCCTACAACAACAACAACCTTAAATCTTCCGAAACACAACCCATACTTCTCATTTCATCAAACATCTCTCGAAGGAATCGCCGCGGTTGTCGGAGAACAAATCCTCTTCGGACCCCACCACACCAAAACAACACCACCATCCACCACCGTTTCACATCCCAAAGCCACAACAACAGACCCAACAAAAACAAACACCAACACCATTCCATTGAACAAGAACTACAGAGGAGTTAGAAAACGACCATGGGGAAGATGGTCAGCGGAAATCCGCGACAGAATCGGCCGGTGCCGTCACTGGCTAGGAACATTCGACACTGCCGAAGAAGCGGCGCGTGCTTACGACGCAGCAGCCAGGCGTCTGAGAGGCTCTAAGGCTAGGACAAACTTTAAGATACCGTCGGTTTTGCCTATACCGTTATCACCAAACTCGAATGAGTCTTGTTCTTCTTCTGAAACTAACGGTAAGAAAAAGGTAGTGCGGAACAGTGTTAGGAAGTGTTGTGTTGTTAGTTCTGTTGGTGAGTTGTTCAGTGGTGTACCTGAAGTTCGAAGAGAAAGGGATAGTAATGGTAATGGAGTAGAATTTGGTGGTAGGAACAGTACTGGAATGGTGGTGTAG 645 0.4651 MNIENFSYNPTTTTTLNLPKHNPYFSFHQTSLEGIAAVVGEQILFGPHHTKTTPPSTTVSHPKATTTDPTKTNTNTIPLNKNYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFKIPSVLPIPLSPNSNESCSSSETNGKKKVVRNSVRKCCVVSSVGELFSGVPEVRRERDSNGNGVEFGGRNSTGMVV 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00197 214 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Vivi5g00197 214 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Vivi5g00197 214 SUPERFAMILY DNA-binding domain 82 139 IPR016177 GO:0003677
Vivi5g00197 214 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 66 162 - -
Vivi5g00197 214 Pfam AP2 domain 82 131 IPR001471 GO:0003700|GO:0006355
Vivi5g00197 214 CDD AP2 81 140 IPR001471 GO:0003700|GO:0006355
Vivi5g00197 214 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
Vivi5g00197 214 MobiDBLite consensus disorder prediction 195 214 - -
Vivi5g00197 214 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Vivi5g00197 214 MobiDBLite consensus disorder prediction 50 80 - -
Vivi5g00197 214 Gene3D AP2/ERF domain 81 140 IPR036955 GO:0003700|GO:0006355
Vivi5g00197 214 FunFam Ethylene-responsive transcription factor 2 81 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00197 Vivi-Chr5 2356091 2357167 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00197 28 145 AP2-EREBP Transcription Factor Family AT1G80580 61.017 9.13e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi5g00197 AP2 1.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00197 - - cam:101490906 256.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g00197 5 2356091 2357167 Vivi5g00197 5 2356091 2357167 ECH