Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00193 ATGGCATCAAGTGGAGGTGTTAATAGAAAAGTTTGTGTTACTGGAGCAGGAGGGTTTATAGCATCATGGCTGGTTAAACTTCTTCTTTCTAAAGGTTATGTTGTCCATGGAACAGTTAGAGACCCTGGTAGCCAGAAATATGAACACTTACTGAAACTTGAGAAGGCTTCTGAGAATCTTACACTCTTCAAAGCAGATATTTTAGATTATGAATCTGTTTACTCCGCAATCGTTGGATGCAGTGCAGTTTTCCATGTCGCTTGTCCTGTGCCATCAACCATTGTACCTAATCCTGAGGTGGAAGTGATTGAGCCTGCAGTGAAGGGAACAACTAATGTACTCGAAGCATGTCTAAAAGCTAAAGTAGAACGCGTCTTGTTTGTTTCATCGATCGCCGCTGTTCTCATCAATCCTAATTTACCAAAAGATAAAGTGATCGATGAGTCTTTTTGGTCCGACAAAGACTATTGCAGAGAAACTAAGAACTGGTATTGCTTTGCGAAGACAGAGGCGGAAGAGCAGGCGTTGAACTTCGCAAAAAGAACGGGGCTTCATATGGTGAGCATTTGTCCTAGTTTAGTTTTGGGGCCAATTTTGCAGTCAACCACTAATGCAAGTAGCTTGTTTCTCATCAAACTTTTAAAAGGCGACGATTCATTGGAGAATAGACAACGATGGCTAGTTGACGTGCGTGACGTAGCTAATGCATTAATTTTGGCTTATGAGAATCATGGAGAAGGGAGATATATATGTACTTCACACACTTTCACTACACGAGATTTGGCAGAGAAATTGAAGAGTATATATCCAAACTACAAGTATCCTACCGACTATACTGAGGTGGGTGAATACAAAATGTTGAGCACAGAATACAAAATGGTGAGCTCAGAGAAACTGCAAAATTTGGGTTGGAAATTCAGGCCAATAGAGGAAACACTGGTTGATTCTATTGAGAGCTATAAGAAGGCAGGACTACTTGAATCAGAATAA 990 0.4061 MASSGGVNRKVCVTGAGGFIASWLVKLLLSKGYVVHGTVRDPGSQKYEHLLKLEKASENLTLFKADILDYESVYSAIVGCSAVFHVACPVPSTIVPNPEVEVIEPAVKGTTNVLEACLKAKVERVLFVSSIAAVLINPNLPKDKVIDESFWSDKDYCRETKNWYCFAKTEAEEQALNFAKRTGLHMVSICPSLVLGPILQSTTNASSLFLIKLLKGDDSLENRQRWLVDVRDVANALILAYENHGEGRYICTSHTFTTRDLAEKLKSIYPNYKYPTDYTEVGEYKMLSTEYKMVSSEKLQNLGWKFRPIEETLVDSIESYKKAGLLESE 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00193 329 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 10 317 - -
Vivi5g00193 329 Pfam NAD dependent epimerase/dehydratase family 11 244 IPR001509 -
Vivi5g00193 329 Gene3D - 4 329 - -
Vivi5g00193 329 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 321 IPR036291 -
Vivi5g00193 329 CDD FR_SDR_e 11 304 - -
Vivi5g00193 329 FunFam NAD(P)-binding Rossmann-fold superfamily protein 5 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00193 Vivi-Chr5 2293772 2296504 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00193 10 327 Monolignol Biosynthesis Gene Families AT2G33590 61.682 2.83e-140 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00193 - - gmx:100784817 485.337