Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00192 ATGGCCAGACCTCAACAACGTTATCGAGGTGTTCGACAAAGGCATTGGGGTTCTTGGGTCTCCGAAATTCGTCACCCTTTACTGAAAACAAGAATATGGTTAGGAACATTTGAAACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGATTAATGTGTGGACCAAAAGCACGTACAAATTTCCCATACAATCCAAATGGACCACAATCTTCTTCATCTAAGCTTCTTTCACCAACTTTAACTGCAAAGCTAAACAAATGTCACATGGCTTCTCTTTCTCTTCAAATGTCAAAACAACCTCAAAAAGAGACACAACAACATGTTTCAACACAAAGTTTCAGTTCTTGTTCTAGTAACAATAGCGGTTTTGTTTATGGTAATGATGACATTGGTGGTGGAACAAGTGATGAAAGTGGTTTGATTAGATGGCTTGATGAAGGGAATAGTTTTGTTGGTTTTGAAAGTCATCATGTTGAAGTTTCTCATCAGGAATTTCAACCTGTTCTTCAAGATGATCATATCGAACAAATGATTCAAGAGTTGCTTGATTCTGGTTGCTCAATCGAGATTTGTTCCGTTGGTTCATCTTAG 597 0.3836 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNGPQSSSSKLLSPTLTAKLNKCHMASLSLQMSKQPQKETQQHVSTQSFSSCSSNNSGFVYGNDDIGGGTSDESGLIRWLDEGNSFVGFESHHVEVSHQEFQPVLQDDHIEQMIQELLDSGCSIEICSVGSS 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00192 198 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 111 - -
Vivi5g00192 198 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Vivi5g00192 198 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Vivi5g00192 198 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Vivi5g00192 198 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Vivi5g00192 198 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Vivi5g00192 198 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Vivi5g00192 198 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Vivi5g00192 198 MobiDBLite consensus disorder prediction 97 119 - -
Vivi5g00192 198 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Vivi5g00192 198 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00192 Vivi-Chr5 2183757 2184969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00192 1 195 AP2-EREBP Transcription Factor Family AT5G25190 61.026 1.93e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi5g00192 AP2 8.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00192 - - qsa:O6P43_017963 243.047