Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00163 ATGGATACTACAAAGCAAAAGCATGAATCATCTTCTCAACTTGTGCTTGATCTAAGTCTCTCTAGCAAAGATTCATGTGACGATGAATATTCAAAGCCGGAACTAAACCTCCTCAATTGCTTCCATGCGAGTTTATCAGAAAGCTCGTCGGAATCGAGTCATGAAAATGAACTTGATCCAAGAGTTTTCTCATGCAACTACTGCCAAAGAAAATTCTATAGCTCGCAAGCGCTAGGAGGACACCAGAATGCTCATAAGCGCGAAAGAACTTTGGCGAGGAGAGGCTATTCAACTAGCATGGCTTCTTCTCTTCCTTCTTATGGCTTATGTAACAAGTCACTTGGCATTCAAGTGCATTCTATGATCAACAAACCTTCTTATCAAACACAAACACAAACACCCTTTTTTGGATTTTGTTCAAATGGACAAAATGGTTGGAAAAGACCGATTTTTGACTCACAACCGGCAATCGGAAAGCCTCCATGCGAAAACTTTCATGTGAGGAATGAATCTGATCCATCTTTTGGCAGTGGCATTCAAAGGGTAGCTATGTTTCCTAAAAGTCTTGTGAATGAAGGATTTGGACTTGGAGGTTACTTAATGGATAACACCATTTCACATTTGAAGCCTAAACAAGACAAGTTGCAGAAGCTTGACTTGTCTCTTAAGCTCTAA 675 0.4015 MDTTKQKHESSSQLVLDLSLSSKDSCDDEYSKPELNLLNCFHASLSESSSESSHENELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYSTSMASSLPSYGLCNKSLGIQVHSMINKPSYQTQTQTPFFGFCSNGQNGWKRPIFDSQPAIGKPPCENFHVRNESDPSFGSGIQRVAMFPKSLVNEGFGLGGYLMDNTISHLKPKQDKLQKLDLSLKL 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00163 224 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Vivi5g00163 224 Gene3D Classic Zinc Finger 43 105 - -
Vivi5g00163 224 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 4 224 IPR044246 GO:0009788
Vivi5g00163 224 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Vivi5g00163 224 FunFam Zinc finger protein 2 41 107 - -
Vivi5g00163 224 SUPERFAMILY beta-beta-alpha zinc fingers 60 90 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00163 Vivi-Chr5 2016975 2018140 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00163 9 224 C2H2 Transcription Factor Family AT5G10970 38.261 4.45e-32 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi5g00163 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00163 - - mtr:25491181 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g00163 5 2016975 2018140 Vivi5g00163 5 2016975 2018140 ECH