Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00161 ATGGACAATGAGGAAATCCCATCAGTACCTTCTACTCCAGCAACTCCAGGTACTCCTGGTGCTCCTCTTTTTGGTGGATTCAAATCTGAAAGAAATGGAAATGGTAGAAGCAACTCATTACTCAAGAGTTTGAAATGTTTTAGTGTTAAAGAATGGACTTTGGAAGATGGTGCCTTACCTACAGTCTCTTGCTCTTTGCCTCCCCCTCCTGTCCCTCTTGCCAAAAAGGTTGGAGCAGAGTTTATAGGCACATATATTCTAATGTTTGCTGGAATAGCCACTGCAATTGTGAACCAAAAGACACAAAATTCAGAGACACTAATTGGATGTGCTGGAGCAACTGGACTAGCAGTTATGATCATAATTTTATCAACCGGTCACATTTCTGGTGCTCATCTCAATCCTGCCGTCACCATTTCATTCGCCGCATTAAAGCACTTTCCCTGGAAAAATGTGCCTTTGTATATTGGTGCACAAGTATTGGCTTCAATATGTGCTGCATTTAGTCTGAAAGGAGTTTTTCATCCATTCATGAATGGTGGTGTCACTGTTCCTTCAGTTGAATATGGCCAAGCTTTTGCTTTAGAGTTCATTATCAGCTTTAATCTCATGTTTGTTGTCACTGCAGTTGCAACCGACACAAGAGCTGTGGGAGAGCTTGCGGGAATCGCGGTGGGAGCCACAGTGATGCTCAATATACTGATTGCTGGGCCTGCAACTGGAGGTTCAATGAATCCAGTAAGAACATTGGGTCCAGCAATTGCTGCAAACAACTACAAAGGCATATGGCTATATATCATAGCTCCTATTCTTGGAGCTTTGGCTGGGGCAGGTGCCTACACTGCTGTTAAACTTCCTGATGAAGATTTTAACACTGAGGTAAAAGCCTCTTCTGCCCCTGGAAGCTTTAGAAGATAA 918 0.4314 MDNEEIPSVPSTPATPGTPGAPLFGGFKSERNGNGRSNSLLKSLKCFSVKEWTLEDGALPTVSCSLPPPPVPLAKKVGAEFIGTYILMFAGIATAIVNQKTQNSETLIGCAGATGLAVMIIILSTGHISGAHLNPAVTISFAALKHFPWKNVPLYIGAQVLASICAAFSLKGVFHPFMNGGVTVPSVEYGQAFALEFIISFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPATGGSMNPVRTLGPAIAANNYKGIWLYIIAPILGALAGAGAYTAVKLPDEDFNTEVKASSAPGSFRR 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00161 305 ProSitePatterns MIP family signature. 132 140 IPR022357 -
Vivi5g00161 305 PANTHER AQUAPORIN NIP2-1 46 289 IPR034294 -
Vivi5g00161 305 PRINTS Major intrinsic protein family signature 226 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g00161 305 PRINTS Major intrinsic protein family signature 75 94 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g00161 305 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g00161 305 PRINTS Major intrinsic protein family signature 151 170 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g00161 305 PRINTS Major intrinsic protein family signature 114 138 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g00161 305 PRINTS Major intrinsic protein family signature 195 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g00161 305 MobiDBLite consensus disorder prediction 1 29 - -
Vivi5g00161 305 CDD MIP 75 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g00161 305 FunFam Aquaporin NIP2-1 63 295 - -
Vivi5g00161 305 Pfam Major intrinsic protein 73 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g00161 305 Gene3D Glycerol uptake facilitator protein. 70 295 IPR023271 -
Vivi5g00161 305 SUPERFAMILY Aquaporin-like 72 292 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00161 Vivi-Chr5 1999536 2002088 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00161 1 305 Major Intrinsic Protein MIP AT1G80760 77.097 2.25e-165 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00161 K09874 - qsa:O6P43_017952 436.802