Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00156 ATGTCAGGTGAGGAAGCTGTTGTTGTAGCTGAGCCTGTTGCTGCTGCTGCACCTGGAATTCCAGGTGAGCCAATGGACATCATGACTGCCTTGCAGCTTGTGCTCAGGAAGTCACTGGCATATGGAGGTCTTGCACGCGGCCTTCACGAAGCTGCGAAAGTGATTGAGAAGCATGCAGGACAACTTTGTGTTCTTGCAGAAGACTGCGACCAACCTGACTATGTTAAACTAGTCAAGGCTCTTTGTGCTGAGCACAATGTTAGCCTGCTGACAGTTCCCAGTGCAAAGACACTTGGAGAATGGGCTGGTTTGTGCAAGATTGATTCTGAGGGAAAAGCTAGGAAAGTTACCGGATGCTCCTGTGTGGTCGTCAAGGATTTCGGGGAGGAGCATGAAGCCTACAATGTTGTTTTGCAGCACGTGAAAGCTCAATGA 435 0.4966 MSGEEAVVVAEPVAAAAPGIPGEPMDIMTALQLVLRKSLAYGGLARGLHEAAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAQ 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00156 144 Gene3D - 10 144 IPR029064 -
Vivi5g00156 144 FunFam 40S ribosomal protein S12 10 144 - -
Vivi5g00156 144 PRINTS Ribosomal protein S12E family signature 89 110 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vivi5g00156 144 PRINTS Ribosomal protein S12E family signature 48 64 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vivi5g00156 144 PRINTS Ribosomal protein S12E family signature 114 127 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vivi5g00156 144 PRINTS Ribosomal protein S12E family signature 34 47 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vivi5g00156 144 SUPERFAMILY L30e-like 24 142 IPR029064 -
Vivi5g00156 144 ProSitePatterns Ribosomal protein S12e signature. 30 48 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vivi5g00156 144 PANTHER 40S RIBOSOMAL PROTEIN S12 18 143 - -
Vivi5g00156 144 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 30 123 IPR004038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00156 Vivi-Chr5 1956820 1958304 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00156 20 144 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 72.800 2.46e-65 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00156 K02951 - gmx:100786733 253.447