Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00149 ATGGATCAACAAAGTGAACCAAGTTTCCAAAATCCAAGAAACATAATCTTCAACAAATATGAGATGGGAAAAGTCTTGGGCCAAGGAAACTTTGCAAAGGTTTACCATTGTAGAAACCTTACAACAAATGAGAGTGTAGCCATCAAGGTGATAAAGAAAGATAACCTGAAAAAAGAGAGGTTAGTGAAGCAAATCAAGCGCGAAGTATCGGTGATGCGTCTCGTTCGCCATCCTCCTATTGTTGAACTCAAAGAAGTTATGGCAACAAAGGGAAATATATTTCTTGTAATGGAATATGTTAAAGGAGGTGAGCTTTTCAATAAAGTTGCTAAAGGAAAATTAAAAGAAGATGTTGCTAGAAAGTATTTTCAACAACTTATTAGCGCGGTTGATTTTTGTCATAGTCGTGGTGTCACACATCGTGATTTGAAACCTGAGAATCTTCTCTTAGACGAAAATGAAAACCTTAAGGTCTCTGATTTTGGACTCTCGGCGCTGCCAGATCAACGCCGAGAGGATGGGATGCTTTTAACTCCGTGTGGAACCCCGGCTTATGTGGCGCCCGAGGTCTTGAAGAAGAAAGGGTATGATGGTTCTAAAGCTGATATATGGTCTTGTGGAGTTATTCTCTATACTTTGCTTTGTGGATATCTTCCTTTCCAAGGTGAGAATGTTATGAGAATTTATACCAAGGCTTTTAAAGGTGAATATCAGTTTCCTGAATGGATTTCACCTCAAGCTAAGTCATTGATTTCAAATCTTCTTGTTGCTGATCCTAAAAATAGGTATTCAATTGTTGATATTATGAATGATGTTTGGTTTCAAAGTGGTTTTGTTAGACCTATTGCATTTTCCATGAAGGATACAAGTATTGAAGACAAAAACAAAGACAAAGAAACCAATTTTGATTTCATTGAGGTCGATGAAAACTATGTTGATGTTCCTGAATTGGTAATGACGAAGCCATCGCGTCCTTTTTATAATGCATTCGAGATCATTTCTTCGCTATCGCATGGTTTTGATCTTAGGAATTTGTTTGAGACAAGGAAAAGGTTGCCTTCAATGTTTATATCAAAGTTTTCGGCTTCAAATGTGTTGGCGAAACTTGAGATGATGACAAAGAAGTTTAACTTTAAGATAACGGGGAAGAAAGAATTTGTGATGAGAATCGAGGGGCCGAGGGAAGGGAGAAAGGGGAAGGTGGCGATGACCGTAGAGGTGTTTGAGGTGGCGCCGGAGGTCGCGGTGGTTGAGTTTTCTAAGTGTAGTGGAGACACATTAGAATATGTTAAGTTGTGTGAAGAACAAGTAAGACCTTCACTTAAAGATATAGTTTGGAGTTGGCAAGGTGATAATGATAATGATAATGAGAACAATTCTTAA 1383 0.3825 MDQQSEPSFQNPRNIIFNKYEMGKVLGQGNFAKVYHCRNLTTNESVAIKVIKKDNLKKERLVKQIKREVSVMRLVRHPPIVELKEVMATKGNIFLVMEYVKGGELFNKVAKGKLKEDVARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENENLKVSDFGLSALPDQRREDGMLLTPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILYTLLCGYLPFQGENVMRIYTKAFKGEYQFPEWISPQAKSLISNLLVADPKNRYSIVDIMNDVWFQSGFVRPIAFSMKDTSIEDKNKDKETNFDFIEVDENYVDVPELVMTKPSRPFYNAFEIISSLSHGFDLRNLFETRKRLPSMFISKFSASNVLAKLEMMTKKFNFKITGKKEFVMRIEGPREGRKGKVAMTVEVFEVAPEVAVVEFSKCSGDTLEYVKLCEEQVRPSLKDIVWSWQGDNDNDNENNS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00149 460 ProSitePatterns Protein kinases ATP-binding region signature. 26 53 IPR017441 GO:0005524
Vivi5g00149 460 ProSiteProfiles NAF domain profile. 322 347 IPR018451 GO:0007165
Vivi5g00149 460 Pfam NAF domain 326 381 IPR004041 GO:0007165
Vivi5g00149 460 Gene3D Transferase(Phosphotransferase) domain 1 11 329 - -
Vivi5g00149 460 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g00149 460 FunFam Non-specific serine/threonine protein kinase 11 99 - -
Vivi5g00149 460 CDD CIPK_C 328 442 - -
Vivi5g00149 460 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 5 442 - -
Vivi5g00149 460 FunFam Non-specific serine/threonine protein kinase 322 446 - -
Vivi5g00149 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Vivi5g00149 460 FunFam Non-specific serine/threonine protein kinase 13 313 - -
Vivi5g00149 460 Gene3D Kinase associated domain 1, KA1 330 447 - -
Vivi5g00149 460 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g00149 460 SMART serkin_6 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g00149 460 SUPERFAMILY Protein kinase-like (PK-like) 16 323 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00149 Vivi-Chr5 1865714 1867755 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00149 4 456 CBL-interacting serine-threonine protein kinases AT5G25110 59.211 0.0 557
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vivi5g00149 Pkinase 1.2e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00149 - - gmx:100812424 698.353