Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00145 ATGGATTGTTCATCATACATCAACACTTCCTTAGATCTCAACATTACTCCTTATAGAGTTCAAGAAAAAGTTCCTAAGAAGGAAGTAGAAAACAACTTTTTCTCCTTGGGGATGACCAACTTTTCTGTCAAAGATGAGACCATTGATGAATTGGAAGAGGAACTGAAAAGGGTGACAGCAGAAAACAAGAAATTGGTGGAAATGCTGTCGGTTGTTTGCGAAAACTACAACGCTTTGAGAAGCCATTTGATGGAATATATGAGTAGAAATCCTGAGAAGGAACTTAGCACAATATCGAAGAAAAGAAAATCCGAAAGCAGCAACAATAATAATAATACTAACAGTAATTTGATTGGAGTTAACAATGGAAACTCTGAAAGTAGTTCTACCGATGAAGAATCGTGTAAGAAACCAAGGGAGGAAGAAGTTATTAAAGCCAAAATTTCAAGAGCTTATGTTAGGACTGATGCATCCGATACTGGACTCATTATGAAGGATGGATACCATTGGAGAAAATATGGACAAAAAGTGACTAGAGATAACCCTTGTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCAAGCTGTCCTGTCAAAAAGAAGGTGCAAAGAAGTGTGGATGATCAATCTATGCTCGTTGCTACTTATGAAGGAGAGCACAATCATCCTCAACCAGCTCCAATGGAATCAACGTCCGGTTCCACCCGTAGCGTGAGCCTTAGTTCGGTACCTAGCTCAGCGTCTCCAAGCTCAACGGCGCCAAAAGTTGTTACACTTGGCTTAACAAATTCCAAGAGTAGTAAAGATTTCAAGAATAATGAACCAAGGAAAGATTCACCAAAGGCAGCAAAGAATTTGGTGGAACAAATGGCTACTTCTTTGACAACTGATCCAAATTTTAGAGCAGCACTTGTTGCAGCCATATCAGGAAGATTGATGCACAATAATTAA 951 0.3901 MDCSSYINTSLDLNITPYRVQEKVPKKEVENNFFSLGMTNFSVKDETIDELEEELKRVTAENKKLVEMLSVVCENYNALRSHLMEYMSRNPEKELSTISKKRKSESSNNNNNTNSNLIGVNNGNSESSSTDEESCKKPREEEVIKAKISRAYVRTDASDTGLIMKDGYHWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVDDQSMLVATYEGEHNHPQPAPMESTSGSTRSVSLSSVPSSASPSSTAPKVVTLGLTNSKSSKDFKNNEPRKDSPKAAKNLVEQMATSLTTDPNFRAALVAAISGRLMHNN 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00145 316 MobiDBLite consensus disorder prediction 225 268 - -
Vivi5g00145 316 MobiDBLite consensus disorder prediction 102 129 - -
Vivi5g00145 316 ProSiteProfiles WRKY domain profile. 163 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi5g00145 316 Gene3D WRKY domain 146 226 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi5g00145 316 MobiDBLite consensus disorder prediction 94 140 - -
Vivi5g00145 316 SMART WRKY_cls 164 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi5g00145 316 MobiDBLite consensus disorder prediction 218 282 - -
Vivi5g00145 316 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 29 312 IPR044810 GO:0003700
Vivi5g00145 316 Pfam WRKY DNA -binding domain 165 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi5g00145 316 Coils Coil 41 68 - -
Vivi5g00145 316 FunFam WRKY transcription factor 40 149 226 - -
Vivi5g00145 316 SUPERFAMILY WRKY DNA-binding domain 162 225 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00145 Vivi-Chr5 1838709 1841001 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00145 4 316 WRKY Transcription Factor Family AT1G80840 50.774 1.53e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi5g00145 WRKY 2.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00145 - - gmx:100807966 422.55