Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00144 ATGGATTGTTCATCATACATCAACACTTCCTTAGATCTCAACATTACTCCTTATAGAGTTCAAGAAAAAGTTCCTAAGGAAGTAGAAAACAACTTTTTCTCCTTGGGGATGACCAACTTTTCTGTCAAAGATGAGACCATTGATGAATTGGAAGAGGAACTGAAAAGGGTGACAGCAGAAAACAAGAAATTGGTGGAAATGCTGTCGGTTGTTTGCGAAAACTACAACGCTTTGAGAAGCCATTTGATGGAATATATGAGTAGAAATCCTGAGAAGGAACTTAGCACAATATCGAAGAAAAGAAAATCCGAAAGCAGCAACAATAATAATAATACTAACAGTAATTTGATTGGAGTTAACAATGGAAACTCTGAAAGTAGTTCTACCGATGAAGAATCGTGTAAGAAACCAAGGGAGGAAGAAGTTATTAAAGCCAAAATTTCAAGAGCTTATGTTAGGACTGATGCATCCGATACTGGACTCATTATGAAGGATGGATACCATTGGAGAAAATATGGACAAAAAGTGACTAGAGATAACCCTTGTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCAAGCTGTCCTGTCAAAAAGAAGGTGCAAAGAAGTGTGGATGATCAATCTATGCTCGTTGCTACTTATGAAGGAGAGCACAATCATCCTCAACCAGCTCCAATGGAATCAACGTCCGGTTCCACCCGTAGCGTGAGCCTTAGTTCGGTACCTAGCTCAGCGTCTCCAAGCTCAACGGCGCCAAAAGTTGTTACACTTGGCTTAACAAATTCCAAGAGTAGTAAAGATTTCAAGAATAATGAACCAAGGAAAGATTCACCAAAGGCAGCAAAGAATTTGGTGGAACAAATGGCTACTTCTTTGACAACTGATCCAAATTTTAGAGCAGCACTTGTTGCAGCCATATCAGGAAGATTGATGCACAATAATTAA 948 0.3903 MDCSSYINTSLDLNITPYRVQEKVPKEVENNFFSLGMTNFSVKDETIDELEEELKRVTAENKKLVEMLSVVCENYNALRSHLMEYMSRNPEKELSTISKKRKSESSNNNNNTNSNLIGVNNGNSESSSTDEESCKKPREEEVIKAKISRAYVRTDASDTGLIMKDGYHWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVDDQSMLVATYEGEHNHPQPAPMESTSGSTRSVSLSSVPSSASPSSTAPKVVTLGLTNSKSSKDFKNNEPRKDSPKAAKNLVEQMATSLTTDPNFRAALVAAISGRLMHNN 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00144 315 ProSiteProfiles WRKY domain profile. 162 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi5g00144 315 Coils Coil 40 67 - -
Vivi5g00144 315 Pfam WRKY DNA -binding domain 164 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi5g00144 315 MobiDBLite consensus disorder prediction 93 139 - -
Vivi5g00144 315 MobiDBLite consensus disorder prediction 224 267 - -
Vivi5g00144 315 FunFam WRKY transcription factor 40 148 225 - -
Vivi5g00144 315 SMART WRKY_cls 163 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi5g00144 315 Gene3D WRKY domain 145 225 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi5g00144 315 MobiDBLite consensus disorder prediction 217 281 - -
Vivi5g00144 315 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 33 311 IPR044810 GO:0003700
Vivi5g00144 315 SUPERFAMILY WRKY DNA-binding domain 161 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi5g00144 315 MobiDBLite consensus disorder prediction 101 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00144 Vivi-Chr5 1838709 1841004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00144 4 315 WRKY Transcription Factor Family AT1G80840 50.932 1.09e-94 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi5g00144 WRKY 2.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00144 - - gmx:100807966 427.172