Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00124 ATGGGGATATATCTGAGTGCTCCAAAAACTGAGAAGGCCTCTGAAGATGGTGAGAATGACATGCTTCGCTTCGGTTTGTCTTCGATGCAAGGCTGGCGTGCTTCTATGGAAGATGCTCATGCAGCTCATCCGTATTTGGACGAGTCTACGTCTTACTTTGGTGTTTATGATGGCCATGGAGGTAAAGCTGTTTCAAAATTCTGTGCCAAGTTTCTACACCAGCAGGTGCTTAGGCATGAAGCTTACTTAGCTGGAGATATAGCCACATCTTTACAGAAATCTTTCCTCAGAATGGATGAGATGATGCGTGGCCAAAGAGGGTGGAGAGAATTAGCAGTCTTGGGAGATAAAATGGAAAAGTTGTCTGGTATGCTAGAGGGGTTTATATGGTCTCCCAGGAGTAGTGAAGCCAATGAGCGTGCCGACGAGTGGGCTTTTGAGGAGGGACCCCATTCTGATTTCGGTGGGCCAAACTCTGGAAGCACAGCGTGTGTGGCTGTCATTCGAGGAAACAAACTTGTTGTTGCAAATGCTGGTGATTCTAGATGTGTGTTATCAAGGAAAGGCCAGGCACACAACTTGTCTAAGGATCACAAGCCTGACCTTGAACTTGAGAAAGACAGGATTCTGAAAGCTGGTGGTTTCATCCAAGTTGGACGAGTCAATGGAAGTTTGAACTTGGCTAGAGCAATTGGTGATATGGAGTTCAAGCAGAACAAGTATTTGCCTGCTGAAAAGCAGGTTGTGACTGCAGATCCGGATGTAACTTCAGTTGAGCTTTGTGATGATGATGAGTTTCTTGTGATAGCATGTGATGGGATATGGGATTGCATGTCCAGCCAACAACTTGTGGACTATATTCATGGCCAGTTAAAGGCAGAGGATAAACTTTCTGCTGTTTGTGAGAAAGTATTTGATAGGTGCTTGGCACCAACAGCTGGTGGTGAGGGATGTGATAACATGACCATGATCTTGATTCAGTTCAAAAATCCTTCCACTTCAGATGCTTCTGCCACAGACCAACCTCAGCCATCTGCTCAACCGGCTCTAAATCCTCCAGCTTCAGATGCATCTGCTCAACCGTCACCAAATCCTCCAGCTTCAGACGCATCTGCTCAACCATCCGAAGCTGACAGAAGTTAG 1143 0.4611 MGIYLSAPKTEKASEDGENDMLRFGLSSMQGWRASMEDAHAAHPYLDESTSYFGVYDGHGGKAVSKFCAKFLHQQVLRHEAYLAGDIATSLQKSFLRMDEMMRGQRGWRELAVLGDKMEKLSGMLEGFIWSPRSSEANERADEWAFEEGPHSDFGGPNSGSTACVAVIRGNKLVVANAGDSRCVLSRKGQAHNLSKDHKPDLELEKDRILKAGGFIQVGRVNGSLNLARAIGDMEFKQNKYLPAEKQVVTADPDVTSVELCDDDEFLVIACDGIWDCMSSQQLVDYIHGQLKAEDKLSAVCEKVFDRCLAPTAGGEGCDNMTMILIQFKNPSTSDASATDQPQPSAQPALNPPASDASAQPSPNPPASDASAQPSEADRS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00124 380 ProSiteProfiles PPM-type phosphatase domain profile. 23 328 IPR001932 -
Vivi5g00124 380 CDD PP2Cc 23 328 IPR001932 -
Vivi5g00124 380 SMART PP2C_4 13 326 IPR001932 -
Vivi5g00124 380 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Vivi5g00124 380 SUPERFAMILY PP2C-like 3 331 IPR036457 -
Vivi5g00124 380 Pfam Protein phosphatase 2C 140 313 IPR001932 -
Vivi5g00124 380 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Vivi5g00124 380 MobiDBLite consensus disorder prediction 332 374 - -
Vivi5g00124 380 Gene3D - 1 329 IPR036457 -
Vivi5g00124 380 PANTHER PROTEIN PHOSPHATASE 2C 18 327 IPR015655 GO:0004722|GO:0006470
Vivi5g00124 380 MobiDBLite consensus disorder prediction 332 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00124 Vivi-Chr5 1504703 1511603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00124 1 340 PP2C-type Phosphatase Gene Family AT2G25070 74.780 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00124 K17499 - gmx:100776787 653.669