Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00108 ATGGAAAAGTACGAAAAGATCGAGAAAGTCGGAGAAGGAACCTACGGCAAAGTATACAAAGCGAAAGAAACATCCACCGGCCAAATCGTGGCCCTCAAAAAAACCCGACTCGAAATGGACGAAGAAGGCGTCCCTCCCACCGCCCTCCGCGAAGTCTCCCTTCTCCAAATGCTCTCTCAATCTCTCTACATCGTCCGCCTCCTCAACGTCGAGCACGTCGACAAAATCCCCAAGTCCGCCTCCCATTCTGCAACCCCTAAGCCGATCCTGTACCTCGTTTTCGAGTATCTCGATACCGATCTGAAGAAATTTATCGATACTTTTCGCAAAGGAGCGAACCCTAGGCCGTTGCCGAGTTCGCTTGTTCAGAGTTTTCTGTTTCAGCTTTGTAAGGGGGTGGCTCATTGTCATAGTCATGGTGTGCTTCATAGGGATTTGAAGCCGCAGAATTTGCTGCTTGATCAGCAGAAAGGGATTTTGAAGATTGCTGATCTTGGTCTTGGGAGAGCTTTTACTGTTCCGCTTAAGAGTTATACGCATGAGATTGTTACTCTTTGGTATAGAGCTCCTGAGGTTTTGCTTGGATCTACTACTTACTCTACTGGTGTTGATATCTGGTCTGTTGGATGTATTTTCGCTGAGATGGTGAGGAGACAGGCTTTGTTTCCAGGGGATTCTGAATATCAGCAGCTTCTTAACATATTCAAGCTTTTGGGGACTCCAACGGAGCAACAATGGCCGGGAGTTAGCTCCTTGCGTGATTGGCATGTCTACCCAAAGTGGGAGCCTCAAAACTTGACAAGAGCTGTGCCGTCTTTGGCACCTGAAGGAGTGGACCTTCTCTCGAAAATGCTCAAGTATAATCCCTGTGAGAGAATATCTGCCAAAGCAGCACTTGATCATCCCTACTTTGACAGTCTTGACAAGTCTCAATATTAA 939 0.4718 MEKYEKIEKVGEGTYGKVYKAKETSTGQIVALKKTRLEMDEEGVPPTALREVSLLQMLSQSLYIVRLLNVEHVDKIPKSASHSATPKPILYLVFEYLDTDLKKFIDTFRKGANPRPLPSSLVQSFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQQKGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTTYSTGVDIWSVGCIFAEMVRRQALFPGDSEYQQLLNIFKLLGTPTEQQWPGVSSLRDWHVYPKWEPQNLTRAVPSLAPEGVDLLSKMLKYNPCERISAKAALDHPYFDSLDKSQY 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00108 312 Pfam Protein kinase domain 4 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g00108 312 PANTHER CELL DIVISION PROTEIN KINASE 1 304 - -
Vivi5g00108 312 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Vivi5g00108 312 SUPERFAMILY Protein kinase-like (PK-like) 1 307 IPR011009 -
Vivi5g00108 312 FunFam Cyclin-dependent kinase 2 100 311 - -
Vivi5g00108 312 ProSiteProfiles Protein kinase domain profile. 4 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g00108 312 FunFam Cyclin-dependent kinase B2,2 1 98 - -
Vivi5g00108 312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Vivi5g00108 312 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vivi5g00108 312 SMART serkin_6 4 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g00108 312 Gene3D Transferase(Phosphotransferase) domain 1 100 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00108 Vivi-Chr5 1270567 1273522 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00108 1 312 Core Cell Cycle Gene Families AT3G54180 82.692 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Vivi5g00108 Pkinase 1.7e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00108 K07760 - gmx:100805119 563.918