Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00099 ATGGCTAAGAGATCTCAAAAAACCACTTCTTCTTCTTCCTCTACTATTACTACTACTACTTCATCTTCTTCTTCTTCTACCACCATGGTGAAACGTAAACGTAAAAGCATCCCAAGAAACTCACCTCCACAAAGAAGCTCTATTTATAGAGGTGTCACAAGACATAGATGGACTGGTAGATATGAAGCTCATTTGTGGGATAAGAATTGTTGGAATCAATCACAAAGCAAGAAAGGAAGACAAGTATATCTAGGTGCTTATGATGATGAAGAAGCTGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTATTGGGGCCAAACCACAATTCTCAACTTTCAAGTATCAAATTATCAAGAGGAGCTCAAAGAGATGGAAGGACAATCAAAAGAAGAATATATTGGATCCTTAAGAAGAAAAAGCAGTGGATTTTCAAGAGGAGTCTCAAAATACAGAGGTGTAGCAAGACACCACCACAATGGAAGATGGGAAGCTCGAATTGGAAGAGTCTTTGGCAACAAATATTTATACCTTGGAACCTATGCTACACAAGAAGAAGCAGCGAGAGCATATGACATGGCAGCAATAGAGTACAGAGGACTTAACGCGGTTACAAATTTTGATCTTAGTTGTTATATCAATAATGATAGCAATAGCAATCATAATCAAAACCCTAGCAATAATAATCAAGAGTTAGATCTTAATCAAGAACTAGTTGATGCAAGTGACACATCAACGACATCTTCAGCAGTCGATCTTATCTTAAACTCATCAAAATTCGAAGAAATGTTACAAAATACTACATCCCCGTCATCGGTTGAAGATAGTTATACTCCATCACTTGTCGAGTTAAATCAGCCTCATCGGAATTTTCCTGAAGATATTCAAACGATCTTTGAAACTCAATATTCAAGTATCTACAACGAGAATGATGACGACTTGATATTTGGTGAATTGAGCTCAATTGATGCACCCATTTTTCATTATGAGCTTGATGCTTGA 1002 0.3743 MAKRSQKTTSSSSSTITTTTSSSSSSTTMVKRKRKSIPRNSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNQSQSKKGRQVYLGAYDDEEAAARAYDLAALKYWGQTTILNFQVSNYQEELKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAARAYDMAAIEYRGLNAVTNFDLSCYINNDSNSNHNQNPSNNNQELDLNQELVDASDTSTTSSAVDLILNSSKFEEMLQNTTSPSSVEDSYTPSLVELNQPHRNFPEDIQTIFETQYSSIYNENDDDLIFGELSSIDAPIFHYELDA 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00099 333 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 11 265 - -
Vivi5g00099 333 FunFam AP2-like ethylene-responsive transcription factor 149 210 - -
Vivi5g00099 333 Gene3D AP2/ERF domain 149 210 IPR036955 GO:0003700|GO:0006355
Vivi5g00099 333 Gene3D AP2/ERF domain 48 116 IPR036955 GO:0003700|GO:0006355
Vivi5g00099 333 ProSiteProfiles AP2/ERF domain profile. 48 114 IPR001471 GO:0003700|GO:0006355
Vivi5g00099 333 PRINTS Ethylene responsive element binding protein signature 190 210 IPR001471 GO:0003700|GO:0006355
Vivi5g00099 333 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Vivi5g00099 333 ProSiteProfiles AP2/ERF domain profile. 150 208 IPR001471 GO:0003700|GO:0006355
Vivi5g00099 333 MobiDBLite consensus disorder prediction 1 51 - -
Vivi5g00099 333 SUPERFAMILY DNA-binding domain 149 210 IPR016177 GO:0003677
Vivi5g00099 333 MobiDBLite consensus disorder prediction 1 31 - -
Vivi5g00099 333 CDD AP2 149 210 IPR001471 GO:0003700|GO:0006355
Vivi5g00099 333 SMART rav1_2 150 214 IPR001471 GO:0003700|GO:0006355
Vivi5g00099 333 SMART rav1_2 48 120 IPR001471 GO:0003700|GO:0006355
Vivi5g00099 333 FunFam AP2-like ethylene-responsive transcription factor 47 116 - -
Vivi5g00099 333 Pfam AP2 domain 149 200 IPR001471 GO:0003700|GO:0006355
Vivi5g00099 333 Pfam AP2 domain 48 106 IPR001471 GO:0003700|GO:0006355
Vivi5g00099 333 SUPERFAMILY DNA-binding domain 47 116 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00099 Vivi-Chr5 1200200 1205818 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00099 44 212 AP2-EREBP Transcription Factor Family AT5G57390 73.373 1.18e-91 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vivi5g00099 AP2 7.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00099 K09285 - gmx:100807781 404.831