Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00075 ATGGATGGTATTCACGGGGATGATTCGCGAATGGAGAATGGTGATGGACAACATCCTATACATATGTCATATGAACATCATGGATTGCACCATATGAGCAATGGGAATGGGATGGAGGATGATCAAAATAACGGTTGTGGCGGTGATTCTAACTGCGGTGGAAGTGAAAATGCGGAAGGTGATGTACCCTCCAACAATGGAAATCTTCATGACAATCAAAGTTTAATAATGGATCAAGGGAATAATGATATTGGAGATCAGCTTAGTTTGTCTTTTCAAGGACAGGTTTATGTCTTTGACTCGGTTTCACCAGAAAAGGTTCAATCTGTACTTCTGTTACTCGGAGGCCGTGAACTTCCTCCAACCATACCTTCCATGCCAATTTCTCCTGACGAAAATAACCGGGGATTTACCGGCACTCCACAAAAATTCAGTGTCTCTCAAAGATTAGCTTCATTGATTAGATTTCGTGAAAAGCGGAAGGAGCGAAATTTTGACAAAAAAATTCGTTATACTGTTCGTAAAGAAGTAGCATTAAGGATGCAAAGAAATAAAGGCCAGTTTACATCTTCCAAGTCCAGTCATGATGAGTCTGAAATAAATTGCGGAACAAATGAAGGGTTGGTGGCAGACAATAATGGATCCCAACAGCAAGATACTGTTTGTAGGCACTGTGGCATCAGTGAGAAGTGCACGCCAATGATGCGACGTGGACCTGAAGGGCCAAGAACCCTCTGCAATGCTTGTGGACTTATGTGGGCAAATAAGGGAGCTCTTAGGGACCTATCAAGAGCCGCAACCTTGCCAACACACAATTCTCCACTAAACAAGAATGAGAGTCAAAATTTGGAGAACAATCAGACGGTGCTTAGAGATGCTGCTGAATCATCATGA 894 0.4251 MDGIHGDDSRMENGDGQHPIHMSYEHHGLHHMSNGNGMEDDQNNGCGGDSNCGGSENAEGDVPSNNGNLHDNQSLIMDQGNNDIGDQLSLSFQGQVYVFDSVSPEKVQSVLLLLGGRELPPTIPSMPISPDENNRGFTGTPQKFSVSQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSSHDESEINCGTNEGLVADNNGSQQQDTVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGALRDLSRAATLPTHNSPLNKNESQNLENNQTVLRDAAESS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00075 297 ProSitePatterns GATA-type zinc finger domain. 222 249 IPR000679 GO:0006355|GO:0043565
Vivi5g00075 297 SMART tify_2 81 116 IPR010399 -
Vivi5g00075 297 Gene3D - 212 277 IPR013088 GO:0006355|GO:0008270
Vivi5g00075 297 ProSiteProfiles GATA-type zinc finger domain profile. 216 264 IPR000679 GO:0006355|GO:0043565
Vivi5g00075 297 PANTHER GATA TRANSCRIPTION FACTOR 28 15 287 IPR045280 GO:0006355
Vivi5g00075 297 MobiDBLite consensus disorder prediction 1 34 - -
Vivi5g00075 297 Pfam tify domain 87 115 IPR010399 -
Vivi5g00075 297 ProSiteProfiles CCT domain profile. 149 191 IPR010402 GO:0005515
Vivi5g00075 297 CDD ZnF_GATA 221 263 IPR000679 GO:0006355|GO:0043565
Vivi5g00075 297 ProSiteProfiles Tify domain profile. 81 116 IPR010399 -
Vivi5g00075 297 Pfam CCT motif 149 191 IPR010402 GO:0005515
Vivi5g00075 297 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 279 - -
Vivi5g00075 297 SMART GATA_3 216 269 IPR000679 GO:0006355|GO:0043565
Vivi5g00075 297 MobiDBLite consensus disorder prediction 1 80 - -
Vivi5g00075 297 MobiDBLite consensus disorder prediction 36 80 - -
Vivi5g00075 297 MobiDBLite consensus disorder prediction 268 297 - -
Vivi5g00075 297 Pfam GATA zinc finger 222 257 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00075 Vivi-Chr5 911871 915595 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00075 1 294 Tify Gene Family AT1G51600 60.667 1.59e-126 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi5g00075 GATA 1.1e-13 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00075 - - pvu:PHAVU_008G254600g 451.055