Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00045 ATGTTGTCATTGATTCTTCTCGCATTTTTTCTCTCTTTAGATAGTGGAATTTTTGTTGCATCATTTGGAATCAATTATGGACAAGTGGCCAACAATTTGCCACCACCAACCAAAGTCCTTGAGCTTCTCAGCAATTTAAAGATCACAAAAACAAGAATCTACGACACGAATCCGGAGATTCTGAAAGCCTTTGCGAATTCGAATGTGGAAGTCATTGTGACAGTTGAGAATCAAATACTAAACCAGTTGAATGATCCACAACAAGCACTTCAATGGGTGAATACTAATATCAAACCATATGTGCCTGACACAAAGATAACTGGAATTCAAGTAGGAAATGAAGTTTTCACCGAAATCGACTCGAGCCTAATTCAGTATCTTGTTCCAGCAATGATCAACATTCATAATGGTTTAGTTCAATTAGGTTTAGACACAAACATTCATGTGTCAACACCTAGTTCATTAGAAGTTCTTGAAGAATCTTACCCTCCTTCAGCTGGTAGTTTCAGAAGTGAAATCTCAGGAATCATGTATGAATTATTGAACTTTTTGTCGAAAACGAAATCGCCCTTTTGGATCAATGCTTATCCTTATTTTGCTTATAAGAATGACCCTAATCAAATATCATTAGATTATGTATTATTTAATACTAATCAAGGAATGGTTGATCCTAATACAAATCTACATTATGATAACATGCTATATGCTATGGTAGATGCAGTTACATTTGCAATATCTAAATTAGGGTTTAATGGGATAGAAGTTAGGGTTTCTGAGACAGGTTGGCCATCTAAAGGTGACTCAGATGAAATTGGTGCATCATTGAAAAATGCTGAGATTTATAACAAGAATTTGTTGAAAAGACAAATGGCAAATGAAGGAACACCTTTGAGGCCTAGAATGAGATTGGAATCATACTTGTTTGCATTGTTTAATGAAAATCTCAAGAACGGACCGACATCGGAAAGAAATTATGGATTGTTTGAGCCTGATGAATCTATGACATACAATGTTGGATTGTCTTCTTTTGCTAAATCATCAAATCCATCTACTTCAATTTCTCTTACCTCCTCTGCCACTAGAACAAAGGCGGCACAAAAGGAAAACCAAAGCATGTTCTACTGGATGTTTGTCTATTTGCTGATTTCATCACTTTGTGCCTTTGTTTAA 1170 0.3547 MLSLILLAFFLSLDSGIFVASFGINYGQVANNLPPPTKVLELLSNLKITKTRIYDTNPEILKAFANSNVEVIVTVENQILNQLNDPQQALQWVNTNIKPYVPDTKITGIQVGNEVFTEIDSSLIQYLVPAMINIHNGLVQLGLDTNIHVSTPSSLEVLEESYPPSAGSFRSEISGIMYELLNFLSKTKSPFWINAYPYFAYKNDPNQISLDYVLFNTNQGMVDPNTNLHYDNMLYAMVDAVTFAISKLGFNGIEVRVSETGWPSKGDSDEIGASLKNAEIYNKNLLKRQMANEGTPLRPRMRLESYLFALFNENLKNGPTSERNYGLFEPDESMTYNVGLSSFAKSSNPSTSISLTSSATRTKAAQKENQSMFYWMFVYLLISSLCAFV 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00045 389 SUPERFAMILY (Trans)glycosidases 22 338 IPR017853 -
Vivi5g00045 389 FunFam Glucan endo-1,3-beta-glucosidase 14 20 346 - -
Vivi5g00045 389 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 12 351 IPR044965 GO:0004553|GO:0005975
Vivi5g00045 389 Pfam Glycosyl hydrolases family 17 23 338 IPR000490 GO:0004553|GO:0005975
Vivi5g00045 389 Gene3D Glycosidases 20 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00045 Vivi-Chr5 426694 429025 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00045 4 363 Glycoside Hydrolase AT4G18340 64.722 1.14e-175 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00045 - - gmx:100791994 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g00045 5 426694 429025 Vivi5g00045 5 426694 429025 ECH
Vivi4g03326 4 148633556 148635684 Vivi5g00045 5 426694 429025 PCT