Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00032 ATGGATTCAAAGAAGTCTAACAAAATAAGAGAGATTGTTAAGCTTCAACAAATCCTCAAGAAGTGGAAAAAAGTTGCTACAAATGCTTCCACTAACAACAACTCGAACTCGAGTAACTCGAGTATTAGTGGTAGTAGTAGCGGTAGTAAAAGTATCAAGTTTTTGAAACGAACTTTATCATTCAACGATGTTTCGATTTCGAATGTGGACATAGTTCCAAAAGGTTTTCTAGCTGTTTGTGTAGGGAAAGAGCTCAAGAGATTCATTATTCCAATGGACTACTTAAAACATCAAGCATTTGAGGTTTTGCTTCAAGAAGCTGAAGAGGAGTTTGGTTTTCAACAAGAAGGTGTACTCAAAATTCCATGTCAAGTATCAATGTTTGAGAAGATATTGAAGGTGGTGGAAGATAAAAAAGAAGACTTAAACTTGCATGAGTTTGGATTCAATGGAGAGAATGACATGGTTAGTTGTGATGTTACTCCCACTCATCATGCTCAAGTTTGTAGATGA 513 0.3587 MDSKKSNKIREIVKLQQILKKWKKVATNASTNNNSNSSNSSISGSSSGSKSIKFLKRTLSFNDVSISNVDIVPKGFLAVCVGKELKRFIIPMDYLKHQAFEVLLQEAEEEFGFQQEGVLKIPCQVSMFEKILKVVEDKKEDLNLHEFGFNGENDMVSCDVTPTHHAQVCR 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00032 170 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 43 131 IPR003676 GO:0009733
Vivi5g00032 170 Pfam Auxin responsive protein 21 134 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00032 Vivi-Chr5 256488 257163 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00032 1 170 Calmodulin-binding Proteins AT2G24400 54.839 9.68e-57 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00032 K14488 - qsu:112034281 217.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g00032 5 256488 257163 Vivi5g00032 5 256488 257163 ECH