Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00029 ATGTCTAGGATATTTGTGAACAATTTGCCTAAATATGTTGCGGAGGATCGACTTAGAGAATTCTTTTCTCAGAAAGGAGAAATAACTGATGTCAATCTGCCTACCAAGAACGGAAAAAGTCGCCAATTTGCCTATATTGGCTTTCGGACAGACCAGCAAGCTCAGGAAGCCATTCAATATTTTAATAAATCTTACCTTGACACCAGAAGAATTACCTGTCAGTTGTCTCTGAAACGCAGTGATGCAAATCTTCCACGTCCGTGGAGTCGGCATTCAACAAAGGAGGGCAATAAAGTGATCACCCCAAATGCAAAAGATCATGCTAGAGCTAAAGGGCAAGAAGACAATGCTAAGGACATTGATGACCCCAAGCTTCAAGATTTTCTTCAGGTCATGCAACCTCGCGCAAACTCTAAGCTCTGGGGAAACGATACTACAATTGTATCCAACGATGCTAACAACCAAACAACATTGAATAAAGAGACTCATGGTACATCAATTGCAAACCATCCTATCTTAAGCGATGCACAAGCAGTTGATGATAAAGTAATGACTGATATGGATTATTTCCAGAGTAGAGTGATAACAGAGTGGTCTGATTCTGTAAGCAGCGATGATGAAAATAACATTGACAACAGTCATTCAGAATCTGCTGATGACGATGACAAAGATAACCGTTGTCATGGTAGTGAACGTGAAGAAGAAGATTGTGGTAATAACCCTTCAGAAAGAAACCCGAGAAGTGGTGCTCAAGAGTTAGATACTTTTGGAGAGGATGTTGCCAACGATAAGTTTCAAGTGAGTGCAACTGAGGATAAGAAAGAAGTTTCTGAGGCATATCGACTGTTTGTCCGTAATCTGCCATACACGACCACGGACGAGGAGCTGGAAGAGCATTTCAGTCAGTTTGGTGGTTTCTCACACGTTCATTTAGTTGTTGATAAGGAAACAAACCGATCCAAGGGAAGGGCTTATATTCATTTCACAGCTCCAGATTCTGCAGCCAGGGCGTTACAAGAGTCGGACAATTCAATCTTCCAAGGGAGATTATTACATGTTATGCCAGCTATACAAAGACCTTCAAGCAATGAAAAGAAAAATGTTTCCAAGGACCAAGGAACAAAAACTCTCAAACAGCGAAGACAACAAGAGAGGAAAGCAAGTGAAGCTAGTGGAGATACCAGAGCATGGAATAGTCTGTTTATGCGCCCTGATACAATTGTAGAAAATATTACTCGGAAATATGGTGTTAGTAAAAGTGATTTACTGGATCGAGAAGCTGATGATCCTGCTCTAAGTATTGCTCTGGGAGAAACACAAGTGATTTCAGAAACAAAAAATGCATTTAAAAAAGCTGGAGTAAACGTGGAAGCTTTGGAGGAGCTTGCGAAGGGTAAAGTTGATGGCATTACAAGAAGTAACAATGTAATTTTAGCGAAGAATCTGCCCTATAGCGCTACCAAAAATGAACTTGCAAAGATGTTTGGGGAATTTGGTAGTTTGGATAAAATAATTCTCCCCTCCACAAAAACATTGGCCCTGGTTGTTTTCCTTGAAGCAGCAGAAGCTAAAGCTGCTTTTAGAGGTTTAGCTTACAAGCGTTACAAGGATGCTCCCTTATACTTGGAGTGGGCTCCTTCCAATGTTCTTAGCGACAACGAGATGAATAGTGGAATTGGTGAAAAGGATGTCAAGCGACAGATGCTGGAGCAAGATGTGGAAAGAATATCCGATGTGGAAATTGATCCAGACAGAGCTCGGTCCGTGTTTGTCAAGAACCTAAGTTTCAAGACAACAGAAGAGGGTTTGAGGAAACATTTCAGTGAACACATGAAAGAGGGGAAAATTTTGAGTGTCAAGGTGAAGAAGCATTTGAGAAATGGAAAAAATGTTTCTATGGGGTATGGATTTGTTGAGTTTGACTCCACAGAGACTGCTACAAGTGTTTGCAGCGATTTACAGGGGACTGTTTTGGACGGTCATGCTCATATTTTACAACTTTGTCGTGTCAAGAATGATGCTAAAGTAGAAAAGAGAGTTGAGAAAAACAAGAGTTCAACTAAGTTGCTTGTGAAAAATGTTGCTTTTGAGGCAACAAAGAAGGATCTGAGACAATTGTTTAGTCCGTTTGGGCAGATTAAAAGTTTAAAATTGCCGATGAGGTTTGGAAAGTATAGAGGCTTTGCTTTTGTGGAGTATGTAACCCAGCAGGAGGCACAAAATGCTCTTACAGCTCTCTCCAGCACCCACTTGTATGGCAGACATCTTGTGATAGAGAGAGCGGAAGAAGGTAAAAGTTTGGAGGAACTGCGGGCTCAAACTGCAGCTCAATTTAATCAACATAGCGGATATCAATATGCTAATAACTTATCCAAGAAAAGGAAAGCCATCGGTATGGTTGATGAAGAAAACATCAAGTTTGGAAGGTTTGATTAG 2436 0.4076 MSRIFVNNLPKYVAEDRLREFFSQKGEITDVNLPTKNGKSRQFAYIGFRTDQQAQEAIQYFNKSYLDTRRITCQLSLKRSDANLPRPWSRHSTKEGNKVITPNAKDHARAKGQEDNAKDIDDPKLQDFLQVMQPRANSKLWGNDTTIVSNDANNQTTLNKETHGTSIANHPILSDAQAVDDKVMTDMDYFQSRVITEWSDSVSSDDENNIDNSHSESADDDDKDNRCHGSEREEEDCGNNPSERNPRSGAQELDTFGEDVANDKFQVSATEDKKEVSEAYRLFVRNLPYTTTDEELEEHFSQFGGFSHVHLVVDKETNRSKGRAYIHFTAPDSAARALQESDNSIFQGRLLHVMPAIQRPSSNEKKNVSKDQGTKTLKQRRQQERKASEASGDTRAWNSLFMRPDTIVENITRKYGVSKSDLLDREADDPALSIALGETQVISETKNAFKKAGVNVEALEELAKGKVDGITRSNNVILAKNLPYSATKNELAKMFGEFGSLDKIILPSTKTLALVVFLEAAEAKAAFRGLAYKRYKDAPLYLEWAPSNVLSDNEMNSGIGEKDVKRQMLEQDVERISDVEIDPDRARSVFVKNLSFKTTEEGLRKHFSEHMKEGKILSVKVKKHLRNGKNVSMGYGFVEFDSTETATSVCSDLQGTVLDGHAHILQLCRVKNDAKVEKRVEKNKSSTKLLVKNVAFEATKKDLRQLFSPFGQIKSLKLPMRFGKYRGFAFVEYVTQQEAQNALTALSSTHLYGRHLVIERAEEGKSLEELRAQTAAQFNQHSGYQYANNLSKKRKAIGMVDEENIKFGRFD 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00029 811 SUPERFAMILY RNA-binding domain, RBD 584 762 IPR035979 GO:0003676
Vivi5g00029 811 MobiDBLite consensus disorder prediction 364 391 - -
Vivi5g00029 811 SUPERFAMILY RNA-binding domain, RBD 271 367 IPR035979 GO:0003676
Vivi5g00029 811 SUPERFAMILY RNA-binding domain, RBD 472 551 IPR035979 GO:0003676
Vivi5g00029 811 CDD RRM6_RBM19_RRM5_MRD1 687 761 - -
Vivi5g00029 811 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 587 672 IPR000504 GO:0003723
Vivi5g00029 811 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 589 661 IPR000504 GO:0003723
Vivi5g00029 811 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 480 538 IPR000504 GO:0003723
Vivi5g00029 811 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 71 IPR000504 GO:0003723
Vivi5g00029 811 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 352 IPR000504 GO:0003723
Vivi5g00029 811 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 689 756 IPR000504 GO:0003723
Vivi5g00029 811 MobiDBLite consensus disorder prediction 200 250 - -
Vivi5g00029 811 Gene3D - 197 372 IPR012677 -
Vivi5g00029 811 Gene3D - 1 118 IPR012677 -
Vivi5g00029 811 FunFam Multiple RNA-binding domain-containing protein 1 466 571 - -
Vivi5g00029 811 Gene3D - 584 678 IPR012677 -
Vivi5g00029 811 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 78 IPR000504 GO:0003723
Vivi5g00029 811 MobiDBLite consensus disorder prediction 356 393 - -
Vivi5g00029 811 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 687 763 IPR000504 GO:0003723
Vivi5g00029 811 PANTHER RNA-BINDING MOTIF PROTEIN 14B 678 776 - -
Vivi5g00029 811 MobiDBLite consensus disorder prediction 207 241 - -
Vivi5g00029 811 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 358 IPR000504 GO:0003723
Vivi5g00029 811 CDD RRM5_RBM19_like 588 668 IPR034423 -
Vivi5g00029 811 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 475 547 IPR000504 GO:0003723
Vivi5g00029 811 FunFam Nucleotide/nucleic acid binding protein 583 678 - -
Vivi5g00029 811 Gene3D - 469 571 IPR012677 -
Vivi5g00029 811 Gene3D - 679 785 IPR012677 -
Vivi5g00029 811 CDD RRM4_RBM19_RRM3_MRD1 475 546 - -
Vivi5g00029 811 SMART rrm2_1 3 74 IPR003954 GO:0003676
Vivi5g00029 811 SMART rrm2_1 281 354 IPR003954 GO:0003676
Vivi5g00029 811 SMART rrm2_1 588 666 IPR003954 GO:0003676
Vivi5g00029 811 SMART rrm1_1 476 543 IPR000504 GO:0003723
Vivi5g00029 811 SMART rrm1_1 3 74 IPR000504 GO:0003723
Vivi5g00029 811 SMART rrm1_1 688 759 IPR000504 GO:0003723
Vivi5g00029 811 SMART rrm1_1 588 666 IPR000504 GO:0003723
Vivi5g00029 811 SMART rrm1_1 281 354 IPR000504 GO:0003723
Vivi5g00029 811 CDD RRM1_MRD1 2 76 - -
Vivi5g00029 811 SUPERFAMILY RNA-binding domain, RBD 3 88 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00029 Vivi-Chr5 247914 253033 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00029 588 810 Eukaryotic Initiation Factors Gene Family AT1G49760 25.778 1.38e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00029 K14787 - gmx:100798742 1050.04