Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00028 ATGTCAATCTGCCTACCAAGAACGGAAAAAGTCGCCAATTTGCCTATATTGGCTTTCGGACAGACCAGCAAGCTCAGGAAGCCATTCAATATTTTAATAAATCTTACCTTGACACCAGAAGAATTACCTGTCAGTGATGCAAATCTTCCACGTCCGTGGAGTCGGCATTCAACAAAGGAGGGCAATAAAGTGATCACCCCAAATGCAAAAGATCATGCTAGAGCTAAAGGGCAAGAAGACAATGCTAAGGACATTGATGACCCCAAGCTTCAAGATTTTCTTCAGGTCATGCAACCTCGCGCAAACTCTAAGCTCTGGGGAAACGATACTACAATTGTATCCAACGATGCTAACAACCAAACAACATTGAATAAAGAGACTCATGGTACATCAATTGCAAACCATCCTATCTTAAGCGATGCACAAGCAGTTGATGATAAAGTAATGACTGATATGGATTATTTCCAGAGTAGAGTGATAACAGAGTGGTCTGATTCTGTAAGCAGCGATGATGAAAATAACATTGACAACAGTCATTCAGAATCTGCTGATGACGATGACAAAGATAACCGTTGTCATGGTAGTGAACGTGAAGAAGAAGATTGTGGTAATAACCCTTCAGAAAGAAACCCGAGAAGTGGTGCTCAAGAGTTAGATACTTTTGGAGAGGATGTTGCCAACGATAAGTTTCAAGTGAGTGCAACTGAGGATAAGAAAGAAGTTTCTGAGGCATATCGACTGTTTGTCCGTAATCTGCCATACACGACCACGGACGAGGAGCTGGAAGAGCATTTCAGTCAGTTTGGTGGTTTCTCACACGTTCATTTAGTTGTTGATAAGGAAACAAACCGATCCAAGGGAAGGGCTTATATTCATTTCACAGCTCCAGATTCTGCAGCCAGGGCGTTACAAGAGTCGGACAATTCAATCTTCCAAGGGAGATTATTACATGTTATGCCAGCTATACAAAGACCTTCAAGCAATGAAAAGAAAAATGTTTCCAAGGACCAAGGAACAAAAACTCTCAAACAGCGAAGACAACAAGAGAGGAAAGCAAGTGAAGCTAGTGGAGATACCAGAGCATGGAATAGTCTGTTTATGCGCCCTGATACAATTGTAGAAAATATTACTCGGAAATATGGTGTTAGTAAAAGTGATTTACTGGATCGAGAAGCTGATGATCCTGCTCTAAGTATTGCTCTGGGAGAAACACAAGTGATTTCAGAAACAAAAAATGCATTTAAAAAAGCTGGAGTAAACGTGGAAGCTTTGGAGGAGCTTGCGAAGGGTAAAGTTGATGGCATTACAAGAAGTAACAATGTAATTTTAGCGAAGAATCTGCCCTATAGCGCTACCAAAAATGAACTTGCAAAGATGTTTGGGGAATTTGGTAGTTTGGATAAAATAATTCTCCCCTCCACAAAAACATTGGCCCTGGTTGTTTTCCTTGAAGCAGCAGAAGCTAAAGCTGCTTTTAGAGGTTTAGCTTACAAGCGTTACAAGGATGCTCCCTTATACTTGGAGTGGGCTCCTTCCAATGTTCTTAGCGACAACGAGATGAATAGTGGAATTGGTGAAAAGGATGTCAAGCGACAGATGCTGGAGCAAGATGTGGAAAGAATATCCGATGTGGAAATTGATCCAGACAGAGCTCGGTCCGTGTTTGTCAAGAACCTAAGTTTCAAGACAACAGAAGAGGGTTTGAGGAAACATTTCAGTGAACACATGAAAGAGGGGAAAATTTTGAGTGTCAAGGTGAAGAAGCATTTGAGAAATGGAAAAAATGTTTCTATGGGGTATGGATTTGTTGAGTTTGACTCCACAGAGACTGCTACAAGTGTTTGCAGCGATTTACAGGGGACTGTTTTGGACGGTCATGCTCATATTTTACAACTTTGTCGTGTCAAGAATGATGCTAAAGTAGAAAAGAGAGTTGAGAAAAACAAGAGTTCAACTAAGTTGCTTGTGAAAAATGTTGCTTTTGAGGCAACAAAGAAGGATCTGAGACAATTGTTTAGTCCGTTTGGGCAGATTAAAAGTTTAAAATTGCCGATGAGGTTTGGAAAGTATAGAGGCTTTGCTTTTGTGGAGTATGTAACCCAGCAGGAGGCACAAAATGCTCTTACAGCTCTCTCCAGCACCCACTTGTATGGCAGACATCTTGTGATAGAGAGAGCGGAAGAAGGTAAAAGTTTGGAGGAACTGCGGGCTCAAACTGCAGCTCAATTTAATCAACATAGCGGATATCAATATGCTAATAACTTATCCAAGAAAAGGAAAGCCATCGGTATGGTTGATGAAGAAAACATCAAGTTTGGAAGGTTTGATTAG 2331 0.4093 MSICLPRTEKVANLPILAFGQTSKLRKPFNILINLTLTPEELPVSDANLPRPWSRHSTKEGNKVITPNAKDHARAKGQEDNAKDIDDPKLQDFLQVMQPRANSKLWGNDTTIVSNDANNQTTLNKETHGTSIANHPILSDAQAVDDKVMTDMDYFQSRVITEWSDSVSSDDENNIDNSHSESADDDDKDNRCHGSEREEEDCGNNPSERNPRSGAQELDTFGEDVANDKFQVSATEDKKEVSEAYRLFVRNLPYTTTDEELEEHFSQFGGFSHVHLVVDKETNRSKGRAYIHFTAPDSAARALQESDNSIFQGRLLHVMPAIQRPSSNEKKNVSKDQGTKTLKQRRQQERKASEASGDTRAWNSLFMRPDTIVENITRKYGVSKSDLLDREADDPALSIALGETQVISETKNAFKKAGVNVEALEELAKGKVDGITRSNNVILAKNLPYSATKNELAKMFGEFGSLDKIILPSTKTLALVVFLEAAEAKAAFRGLAYKRYKDAPLYLEWAPSNVLSDNEMNSGIGEKDVKRQMLEQDVERISDVEIDPDRARSVFVKNLSFKTTEEGLRKHFSEHMKEGKILSVKVKKHLRNGKNVSMGYGFVEFDSTETATSVCSDLQGTVLDGHAHILQLCRVKNDAKVEKRVEKNKSSTKLLVKNVAFEATKKDLRQLFSPFGQIKSLKLPMRFGKYRGFAFVEYVTQQEAQNALTALSSTHLYGRHLVIERAEEGKSLEELRAQTAAQFNQHSGYQYANNLSKKRKAIGMVDEENIKFGRFD 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00028 776 FunFam Multiple RNA-binding domain-containing protein 1 431 536 - -
Vivi5g00028 776 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 440 512 IPR000504 GO:0003723
Vivi5g00028 776 MobiDBLite consensus disorder prediction 165 215 - -
Vivi5g00028 776 MobiDBLite consensus disorder prediction 321 358 - -
Vivi5g00028 776 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 189 342 - -
Vivi5g00028 776 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 652 728 IPR000504 GO:0003723
Vivi5g00028 776 MobiDBLite consensus disorder prediction 329 356 - -
Vivi5g00028 776 FunFam Nucleotide/nucleic acid binding protein 548 643 - -
Vivi5g00028 776 SUPERFAMILY RNA-binding domain, RBD 437 516 IPR035979 GO:0003676
Vivi5g00028 776 Gene3D - 162 337 IPR012677 -
Vivi5g00028 776 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 552 637 IPR000504 GO:0003723
Vivi5g00028 776 Gene3D - 549 643 IPR012677 -
Vivi5g00028 776 CDD RRM4_RBM19_RRM3_MRD1 440 511 - -
Vivi5g00028 776 MobiDBLite consensus disorder prediction 69 88 - -
Vivi5g00028 776 CDD RRM5_RBM19_like 553 633 IPR034423 -
Vivi5g00028 776 SMART rrm2_1 246 319 IPR003954 GO:0003676
Vivi5g00028 776 SMART rrm2_1 553 631 IPR003954 GO:0003676
Vivi5g00028 776 SUPERFAMILY RNA-binding domain, RBD 648 733 IPR035979 GO:0003676
Vivi5g00028 776 CDD RRM6_RBM19_RRM5_MRD1 652 726 - -
Vivi5g00028 776 Gene3D - 644 750 IPR012677 -
Vivi5g00028 776 Gene3D - 434 536 IPR012677 -
Vivi5g00028 776 SMART rrm1_1 441 508 IPR000504 GO:0003723
Vivi5g00028 776 SMART rrm1_1 553 631 IPR000504 GO:0003723
Vivi5g00028 776 SMART rrm1_1 653 724 IPR000504 GO:0003723
Vivi5g00028 776 SMART rrm1_1 246 319 IPR000504 GO:0003723
Vivi5g00028 776 SUPERFAMILY RNA-binding domain, RBD 545 638 IPR035979 GO:0003676
Vivi5g00028 776 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 445 503 IPR000504 GO:0003723
Vivi5g00028 776 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 554 626 IPR000504 GO:0003723
Vivi5g00028 776 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 654 721 IPR000504 GO:0003723
Vivi5g00028 776 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 247 317 IPR000504 GO:0003723
Vivi5g00028 776 SUPERFAMILY RNA-binding domain, RBD 236 332 IPR035979 GO:0003676
Vivi5g00028 776 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 245 323 IPR000504 GO:0003723
Vivi5g00028 776 MobiDBLite consensus disorder prediction 172 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00028 Vivi-Chr5 247914 253035 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00028 553 775 Eukaryotic Initiation Factors Gene Family AT1G49760 25.778 9.21e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00028 K14787 - gmx:100798742 955.666