Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00011 ATGAAGGATAAAGATAAAAACAAAGACAAGGCAAACGAAACCGAGAAGAGAAAGTATCCTACCGGCGCCAAACATTACCTTCTCCACGAAGAGATTGGACAAGGCGTTAGTGCTTCCGTTCGTCGTGCTATTTGTGTTCCTTTCGACGAGGTCGTTGCCATCAAGATTCTCGACTTCGAACGTGACAGATGTGATCTGAATAATGTGTCTCGTGAAGCGCAAACGATGGTACTAGTGGACCATCCTAATGTATTGAAATCATATTGTTCATTCGTGAGCGATCATAATCTCTGGGTTGTGATGCCATATATGGCGGGAGGTTCGTGTTTTCATATATTGAAAGTTGCACATCCTGAGGGATTTGAAGAGGTTGTTATTGCAACCATACTTAAAGAGGTATTGAAGGGTTTAAAGTATCTTCATCATCATGGTCATATTCATCGAGATGTTAAGGCTGGTAATATTTTGATCGATTCTCACGGTGCGGTTAAGCTCGGCGATTTTGGTGTTTCGGCATGTGTTTTTGATTCCGGTGATCGGCAACGGTCGAGGAATTCTTTTGTTGGAACTCCTTGTTGGATGGCACCTGAGGTTATGGAGCAATTGCATGGCTATAATTTCAAAGCTGACATTTGGTCATTTGGCATAACTGCATTGGAGCTTGCCCACGGTCATCCTCCCTTTTCAAAATATCCACCTTTGAAGGTACTACTTATGACTTTGCAAAATGCACCCCCTGGCCTTGACTACGAAAGTGATAAGAAGTTCTCTAAGTCGTTTAAGAAGATGATTTCTTGTTGTTTGGTTAAAGATCCTTCAAAACGATCATCTGCTAAAAAGTTGTTAAAGCATTCCTTCTTTAAGCAAGCACGTTCCAGTGATTATATTTCACACACACTTTTGGAGGGGTTGCCTGCTCTGGGTTCTCGCATGAAGATTCTAAAAGATGCTTTATCCTTCCAATCCATTTCTTCTAATTTGAGAGCTAGATCAAGATCATATCGAGCTTTCCTTTCTTCCTCCTAA 1026 0.4142 MKDKDKNKDKANETEKRKYPTGAKHYLLHEEIGQGVSASVRRAICVPFDEVVAIKILDFERDRCDLNNVSREAQTMVLVDHPNVLKSYCSFVSDHNLWVVMPYMAGGSCFHILKVAHPEGFEEVVIATILKEVLKGLKYLHHHGHIHRDVKAGNILIDSHGAVKLGDFGVSACVFDSGDRQRSRNSFVGTPCWMAPEVMEQLHGYNFKADIWSFGITALELAHGHPPFSKYPPLKVLLMTLQNAPPGLDYESDKKFSKSFKKMISCCLVKDPSKRSSAKKLLKHSFFKQARSSDYISHTLLEGLPALGSRMKILKDALSFQSISSNLRARSRSYRAFLSSS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00011 341 Pfam Protein kinase domain 28 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g00011 341 CDD STKc_OSR1_SPAK 24 287 - -
Vivi5g00011 341 Gene3D Phosphorylase Kinase; domain 1 14 102 - -
Vivi5g00011 341 FunFam serine/threonine-protein kinase BLUS1 isoform X1 107 333 - -
Vivi5g00011 341 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524
Vivi5g00011 341 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 15 316 IPR047173 GO:0043539
Vivi5g00011 341 Gene3D Transferase(Phosphotransferase) domain 1 107 305 - -
Vivi5g00011 341 ProSiteProfiles Protein kinase domain profile. 26 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g00011 341 FunFam Serine/threonine-protein kinase BLUS1 15 103 - -
Vivi5g00011 341 SMART serkin_6 26 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g00011 341 SUPERFAMILY Protein kinase-like (PK-like) 24 301 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00011 Vivi-Chr5 166929 168712 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00011 15 315 MAP Kinase Kinase Kinase Kinase AT1G79640 81.728 0.0 544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Vivi5g00011 Pkinase 6.5e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00011 K08835 - vvo:131606070 671.774