Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00009 ATGAAGGATAAGGATAAAGACAAGGACAAGGAAAAGGAAACTGAGAAGAAAAAGTATCCTATCGGCGCCGAACATTACGTTCTCCATGAAGAGATTGGACAAGGCGTTAGTGCTTCCGTTCATCGTGCTATTTGTGTTCCTTTCAACGAGATCGTCGCCATCAAGATTCTCGACTTTGAACGTGACAACTGCGATCTGAATAATATATCTCGTGAAGCGCAAACGATGGTACTAGTGGACCATCCTAACGTATTGAAATCACACTGTTCATTCGTGAGCGATCACAATCTATGGGTTGTGATGCCGTTTATGGCGGGTGGATCGTGTCTTCATATATTGAAAGCTGCACATCCTGAGGGATTTGAAGAGGTTGTTATTGCGACCGTGCTTAGAGAGGTGTTGAAGGGTTTAGAGTATCTTCATCATCATGGTCATATTCATCGGGATGTGAAGGCTGGTAATGTTTTGATTGATTCTCGCGGTGCCGTTAAGCTCGGCGATTTCGGTGTTTCGGCTTGTCTTTTTGATTCCGGTGATCGGCAACGGTCGAGGAATACTTTTGTTGGAACTCCTTGTTGGATGGCACCTGAGGTTATGGAGCAATTGCATGGTTATAACTTCAAAGCTGACATTTGGTCATTTGGCATAACTGCATTGGAGCTTGCCCACGGTCATGCTCCTTTTTCAAAATATCCACCTTTGAAGGTACTACTTATGACTTTGCAAAATGCACCCCCTGGCCTTGACTACGAAAGTGATAGGAAATTCTCTAAGTCGTTTAAGCAGATGATTGCTTGTTGTTTGGTAAAAGATCCTTCCAAACGACCATCTGCTAACAGGTTGTTAAAGCATTCCTTCTTTAAGCAAGCACGCTCCAATGATTATATTTCACGCACACTTTTGGAGGGGTTGCCTGCTTTGGGTGCTCGCATGGAGATTCTAAAGAGAAAAGAAGAAGACATGCTTGCACAAAAGAAAATGCCTGATGGGAAGATGGAGGAATTATCACAGAGTGAATACAAACGAGGCATTAGCGGTTGGAACTTTAATCTTGAAGATATGAAGGCCCAGGCTTCTTTGATCAACGATTTTGACGATGCTATATCAGATATCAGTTATGTGGGTAGTTCATCTTCATTATCAACTCTTGATGGACAAGATAAGCAACAGCAAACTCGTCAAACAGTTAACTTGGAGGAAATTGATGAAATGCATACTCCATCAGCTTCTGTTCCGGTAGTAGATTCCACGGTAAATGATGCCAAGACTAAGATTGAAAAATGTGATGATGACTCTAGTATCACCAGTTCAAGCCACGAACCACAAACTTCTTCTGGGCCAGATGATCATGTGGACCATAGTTTAGGTGAAAAATGTAATGTAGAAAATGGTGGAAGCGTGGCTGTCCCTTCTCATCACAGAAGAGCTTCATCAAGCATATTACCGGAAGTTACTCTTCCACCTATTCGGGCAGAAAGCAATATAAATGACAGTGAGAAGCTACCAATTCTGCCTGTCTCAAATGCCAATGCAACTTCAGTTCCCCAGAACGGAGAAGATGTGCTGACTGAACTTCCTTCAAAAGTCTCAAAATCATCAGCTAATTCTGATGACACTGATGATAAAGCAAAGGTACCAGTTGTTCAACAGAGAGGACGTTTTAAGGTTACATCCGAGAACGTTGACCCGGAAAAGGTCACCCCTTCTCCTGTACTGCAAAAGAGTCACAGCATGCAGTTCATAGGCCAGCATAATGCTCCTGCTATTCATTCACCTTTACCGCTATTATCAACAATATCTGATGCTGCTAGTAGTACATCAAATATTTCTGTCTGTTCTCTGTTCCCAGTATTGCACTCTGTGCTGCAGACAAATATTCTTCAGAGGGAAACCATTCTGACTTTAATGAGGCAAATTACTGCTGGTGAATCTCCTGCTGATACCACAACTACCCCGGCACATATAGCAACAATGGAGAAATCCTTGCTTGAATCATGTCACGACAGGGAAAAGGAATTACTTCATGAGATAACTGATTTGCAGTGGAGGCTCATATGCGCCCAGGAAGAGCTTCAAAAATTGAAAACAGATAATGCTCAGGTATGA 2106 0.4255 MKDKDKDKDKEKETEKKKYPIGAEHYVLHEEIGQGVSASVHRAICVPFNEIVAIKILDFERDNCDLNNISREAQTMVLVDHPNVLKSHCSFVSDHNLWVVMPFMAGGSCLHILKAAHPEGFEEVVIATVLREVLKGLEYLHHHGHIHRDVKAGNVLIDSRGAVKLGDFGVSACLFDSGDRQRSRNTFVGTPCWMAPEVMEQLHGYNFKADIWSFGITALELAHGHAPFSKYPPLKVLLMTLQNAPPGLDYESDRKFSKSFKQMIACCLVKDPSKRPSANRLLKHSFFKQARSNDYISRTLLEGLPALGARMEILKRKEEDMLAQKKMPDGKMEELSQSEYKRGISGWNFNLEDMKAQASLINDFDDAISDISYVGSSSSLSTLDGQDKQQQTRQTVNLEEIDEMHTPSASVPVVDSTVNDAKTKIEKCDDDSSITSSSHEPQTSSGPDDHVDHSLGEKCNVENGGSVAVPSHHRRASSSILPEVTLPPIRAESNINDSEKLPILPVSNANATSVPQNGEDVLTELPSKVSKSSANSDDTDDKAKVPVVQQRGRFKVTSENVDPEKVTPSPVLQKSHSMQFIGQHNAPAIHSPLPLLSTISDAASSTSNISVCSLFPVLHSVLQTNILQRETILTLMRQITAGESPADTTTTPAHIATMEKSLLESCHDREKELLHEITDLQWRLICAQEELQKLKTDNAQV 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00009 701 Gene3D Transferase(Phosphotransferase) domain 1 107 336 - -
Vivi5g00009 701 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 15 696 IPR047173 GO:0043539
Vivi5g00009 701 CDD STKc_OSR1_SPAK 24 287 - -
Vivi5g00009 701 FunFam Serine/threonine-protein kinase BLUS1 15 103 - -
Vivi5g00009 701 Coils Coil 677 697 - -
Vivi5g00009 701 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524
Vivi5g00009 701 FunFam serine/threonine-protein kinase BLUS1 isoform X1 107 340 - -
Vivi5g00009 701 SMART serkin_6 26 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g00009 701 Gene3D Phosphorylase Kinase; domain 1 14 103 - -
Vivi5g00009 701 ProSiteProfiles Protein kinase domain profile. 26 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g00009 701 MobiDBLite consensus disorder prediction 424 477 - -
Vivi5g00009 701 Pfam Protein kinase domain 26 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g00009 701 SUPERFAMILY Protein kinase-like (PK-like) 24 288 IPR011009 -
Vivi5g00009 701 MobiDBLite consensus disorder prediction 525 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00009 Vivi-Chr5 156092 162650 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00009 15 683 MAP Kinase Kinase Kinase Kinase AT1G79640 61.953 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Vivi5g00009 Pkinase 2.2e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00009 K08835 - gmx:100780339 1088.94