Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00006 ATGACAATCCAAAAAACACAAGAAATCATTTTTAGGTCTAAGCTCCCTAACATCCACATTCCCAAAAACCTTCCTCTCCATTCCTATTGCTTTGAAAATCTCCCCAAATATGGATCACATCCATGTCTCATCAATGCACCAACTGGCGAAATCTTCACGTACGACGACGTCGAGCTATCCGCCCGACGAGTCGCGTCCGGTCTCCAGAAACTCGGGATCGAACACGGCGATGTCATCATGGTTCTTCTCCCGAATTGTCCCGAATTCGTGTTCTCCTTTCTAGGTGCTTCTATTCGCGGCGCTATAATGACCGCCGCGAATCCTTTTTTTACTGCTGCTGAGATTGCTAAACAAGCAAAAGCTTCTAATGCTAAGTTGATTGTAACGCAAGGTTGTTACTATGAGAAAGTTAAGGATTTGGAAAATGTGAAGCTTGTTTTTGTGGATTCTTTACCAGAAGGAGAAAATCATTTGCATTTCAGTGAATTGGTTAAGGCTCATGAGAATGAAATTGATGAGGTAGAAGTGAACATCAACCCTGATGATGTGGTTGCTTTGCCATTTTCTTCTGGAACAACAGGGTTACCTAAAGGTGTTATGCTAACACACAAAGGACTAGTCACAAGCATAGCACAACAAGTGGATGGTGAAAATCCAAATCTATATTACCATAGTGAAGATGTGATACTATGTGTTCTTCCAATGTTTCATATCTACTCACTCAACTCTGTTTTGCTTTGTGGTTTGAGAGCCAAGGCTTCAATTCTCTTAATGCCAAAGTTTGATATTCATGCATTTTTGGAACTTGTTCATAAATACAGAGTTACCATTGCTCCTGTTGTGCCTCCAATTGTTTTGGCTATTTCTAAGTCACCTGAGCTTGATAGCTATGACCTTTCATCCATTAGGGTTTTGAAATCTGGTGGGGCCCCTCTTGGTAAAGAACTTGAGGACACTGTTAGGGCCAAATTTCCTAAAGCCAAACTTGGACAGGGATATGGAATGACGGAGGCTGGACCAGTGTTAACAATGTGTTTATCATTTGCAAAAGAGCCAATAGATGTTAAACCAGGTGCATGTGGTACTGTTGTTAGAAATGCTGAGATGAAGATTGTTGATCCTGAAAATGATTCTTCTTTGTCTCGTAATCAACCCGGTGAAATTTGTATTAGAGGCGATCAAATCATGAAAGGTTATCTAAATGATCCAGAAGCAACATTGAGAACAATAGACAGAGAAGGTTGGTTGCATACAGGTGACATTGGATACATTGATGATGATGATGAATTGTTCATCGTTGATAGGCTTAAAGAATTGATTAAATACAAAGGTTTTCAAGTTGCTCCAGCTGAACTTGAAGCAATTATTCTCTCTCATCCTCAAATCTCCGATGTTGCTGTCGTCCCAATGCAAGATGAAGCCGCTGGTGAGGTCCCAGTTGCATTTGTAGTTAGATCGAATGGTGATATTGAGACAACTGAAGATGAAATTAAGAAGTTCGTTGCTAAACAGGTGGTGTTTTACAAAAGAATAAATAGAGTATTCTTCATTGATGCTATTCCAAAGTCACCTTCTGGCAAAATATTAAGAAAGGATCTAAGGGCTAAGCTTGCAGCAGGGATTCCAAATTGA 1632 0.4013 MTIQKTQEIIFRSKLPNIHIPKNLPLHSYCFENLPKYGSHPCLINAPTGEIFTYDDVELSARRVASGLQKLGIEHGDVIMVLLPNCPEFVFSFLGASIRGAIMTAANPFFTAAEIAKQAKASNAKLIVTQGCYYEKVKDLENVKLVFVDSLPEGENHLHFSELVKAHENEIDEVEVNINPDDVVALPFSSGTTGLPKGVMLTHKGLVTSIAQQVDGENPNLYYHSEDVILCVLPMFHIYSLNSVLLCGLRAKASILLMPKFDIHAFLELVHKYRVTIAPVVPPIVLAISKSPELDSYDLSSIRVLKSGGAPLGKELEDTVRAKFPKAKLGQGYGMTEAGPVLTMCLSFAKEPIDVKPGACGTVVRNAEMKIVDPENDSSLSRNQPGEICIRGDQIMKGYLNDPEATLRTIDREGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEAIILSHPQISDVAVVPMQDEAAGEVPVAFVVRSNGDIETTEDEIKKFVAKQVVFYKRINRVFFIDAIPKSPSGKILRKDLRAKLAAGIPN 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00006 543 Gene3D - 4 436 IPR042099 -
Vivi5g00006 543 Gene3D - 437 539 IPR045851 -
Vivi5g00006 543 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 535 - -
Vivi5g00006 543 Pfam AMP-binding enzyme C-terminal domain 451 527 IPR025110 -
Vivi5g00006 543 CDD 4CL 20 533 - -
Vivi5g00006 543 FunFam 4-coumarate--CoA ligase 2 438 540 - -
Vivi5g00006 543 FunFam Long-chain-fatty-acid--CoA ligase FadD 12 437 - -
Vivi5g00006 543 Pfam AMP-binding enzyme 35 442 IPR000873 -
Vivi5g00006 543 SUPERFAMILY Acetyl-CoA synthetase-like 11 540 - -
Vivi5g00006 543 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00006 Vivi-Chr5 142048 145977 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00006 8 505 Monolignol Biosynthesis Gene Families AT1G51680 69.763 0.0 703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00006 K01904 - gmx:547944 870.922