Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00004 ATGAAGCCGATTCAGCTTCCACCTCCAACCGCCACCGGCTCAGCTGCAGGTTCTCCTAACCGTCCTCAGCGCCGCCGCAGAGACCTTACGCTTCCGCTTCCTCAGCGTGACACAAACTTAGCGGTTCCGCTTCCGCTTCCTCCGTCCGGTGGTAGCGGTGGAAGCGGAAATGGTTCTGGAGGAAACGGAAGTGGAGGAGGGAACGGAGGAGGAACGAATCAGAATCAGAATCAGCAACTAGTGATTCCGTTCTCCGAGCTTGAGAGGCTGAACCGGATCGGAAGCGGTAGCGGAGGAACGGTTTACAAAGTAGTTCACAGAATCAACGGCCGTGCGTACGCGTTGAAGGTGATATACGGTCATCACGAGGAGTCTGTCCGTCGTCAGATCCATAGAGAAATCCAGATCTTGAGAGATGTTGATGATCCGAACGTGGTGAAGTGTCACGAGATGTACGATCACAACGCTGAAATTCAGGTTCTGTTGGAGTACATGGACGGTGGTTCTCTCGAAGGGAAACACATCCCTCAGGAGAATCAGCTTGCTGACGTGGCGCGTCAGATCCTCCGTGGACTCGCGTATCTCCACCGTCGTCACATCGTTCATCGAGACATCAAACCGTCGAATCTGTTGATCAATTCGCGGAAACAGGTTAAGATCGCTGATTTTGGTGTAGGTAGGATTCTGAATCAAACGATGGATCCGTGCAATTCATCGGTAGGAACGATTGCTTACATGTCACCGGAGAGGATAAACACCGATATCAACGACGGACAATACGATGCTTACGCCGGTGATATATGGAGTCTAGGTGTGAGCATATTGGAGTTTTATATGGGGAGATTTCCGTTTGCGGTTGGGAGGCAAGGTGATTGGGCGAGTTTGATGTGTGCTATTTGTATGTCGCAACCACCGGAAGCTCCGGCGAGTGCTTCGCCGGAGTTTAGGGATTTCGTTTCGCGGTGTTTGCAGAGAGATCCGTCGAGGAGATGGCCGGCATCGAGGCTGCTTTCGCATCCGTTTCTGGCTCGAACCGGTTCTCATCAGAATCAGAGTCCTCCAAATCTTCATCAGATGCTTCCTCCTCCACCAAGGCAAATGTCTTCTTAG 1110 0.5198 MKPIQLPPPTATGSAAGSPNRPQRRRRDLTLPLPQRDTNLAVPLPLPPSGGSGGSGNGSGGNGSGGGNGGGTNQNQNQQLVIPFSELERLNRIGSGSGGTVYKVVHRINGRAYALKVIYGHHEESVRRQIHREIQILRDVDDPNVVKCHEMYDHNAEIQVLLEYMDGGSLEGKHIPQENQLADVARQILRGLAYLHRRHIVHRDIKPSNLLINSRKQVKIADFGVGRILNQTMDPCNSSVGTIAYMSPERINTDINDGQYDAYAGDIWSLGVSILEFYMGRFPFAVGRQGDWASLMCAICMSQPPEAPASASPEFRDFVSRCLQRDPSRRWPASRLLSHPFLARTGSHQNQSPPNLHQMLPPPPRQMSS 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00004 369 Gene3D Phosphorylase Kinase; domain 1 70 166 - -
Vivi5g00004 369 Gene3D Transferase(Phosphotransferase) domain 1 168 357 - -
Vivi5g00004 369 MobiDBLite consensus disorder prediction 1 76 - -
Vivi5g00004 369 SUPERFAMILY Protein kinase-like (PK-like) 84 361 IPR011009 -
Vivi5g00004 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Vivi5g00004 369 MobiDBLite consensus disorder prediction 344 369 - -
Vivi5g00004 369 FunFam Mitogen-activated protein kinase 2 167 354 - -
Vivi5g00004 369 SMART serkin_6 87 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g00004 369 MobiDBLite consensus disorder prediction 52 76 - -
Vivi5g00004 369 Pfam Protein kinase domain 88 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g00004 369 CDD PKc_MAPKK_plant_like 85 342 - -
Vivi5g00004 369 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Vivi5g00004 369 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 65 345 - -
Vivi5g00004 369 ProSiteProfiles Protein kinase domain profile. 87 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00004 Vivi-Chr5 121936 123570 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00004 1 358 MAP Kinase Kinase Gene Family AT1G51660 70.391 4.02e-172 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vivi5g00004 Pkinase 1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00004 K13413 - gmx:100786390 587.03