Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi597g00001 ATGAACTCAACTCCAAACCCTTCCTCTTCATTCGAATTCAATTATCTCCCCTTCAACGAAAACGACCCCGAAGAGATGCTTCTCTACGGCATGATCAACGATGCAAACACCTCCCTCACTAGCACCAGAGTTAAAGAAGAAGAGGTAAGTTCCATAAGTTCCGAAGAGAACGAGCCGCGGAAGGAGAAATCCTACCGCGGCGTTCGAAGGAGGCCATGGGGGAAATTCGCAGCCGAAATAAGGGATTCAACGAGAAACGGAATGAGGGTTTGGTTAGGAACATTTGACAGTGCTGAAGCAGCTGCTTTAGCGTATGATCAAGCTGCTTTTGCCATGAGAGGCACTTCTGCTATACTCAATTTTCCTGTGGAGATTGTGAGAGAATCGCTTAATGATATGAATTGCGATGAATGTTCTGAATATGGTTGTTCTCCTGTTGTTGCTCTTAAGAGGAAACATTCTTTGAGAAGGAAAATCGGGTTCGCGAAGAACAAAGAACAAGATTTTAGAAACAAGAACAACAGTAATAACAATAATATCAGTGTTGATAATTCTGTCGTGTTTGAAGATCTTGGTTCGGATTATTTGGAACAATTGTTGATGTCTTCTGATGAATTTCCTTGTCCTAAGTGA 633 0.4218 MNSTPNPSSSFEFNYLPFNENDPEEMLLYGMINDANTSLTSTRVKEEEVSSISSEENEPRKEKSYRGVRRRPWGKFAAEIRDSTRNGMRVWLGTFDSAEAAALAYDQAAFAMRGTSAILNFPVEIVRESLNDMNCDECSEYGCSPVVALKRKHSLRRKIGFAKNKEQDFRNKNNSNNNNISVDNSVVFEDLGSDYLEQLLMSSDEFPCPK 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi597g00001 210 Pfam AP2 domain 64 114 IPR001471 GO:0003700|GO:0006355
Vivi597g00001 210 PANTHER DNA-BINDING DOMAIN 46 201 IPR044808 GO:0003700|GO:0009873
Vivi597g00001 210 SUPERFAMILY DNA-binding domain 64 124 IPR016177 GO:0003677
Vivi597g00001 210 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Vivi597g00001 210 Gene3D AP2/ERF domain 63 124 IPR036955 GO:0003700|GO:0006355
Vivi597g00001 210 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Vivi597g00001 210 PRINTS Ethylene responsive element binding protein signature 104 124 IPR001471 GO:0003700|GO:0006355
Vivi597g00001 210 MobiDBLite consensus disorder prediction 41 66 - -
Vivi597g00001 210 ProSiteProfiles AP2/ERF domain profile. 64 122 IPR001471 GO:0003700|GO:0006355
Vivi597g00001 210 MobiDBLite consensus disorder prediction 48 65 - -
Vivi597g00001 210 SMART rav1_2 64 128 IPR001471 GO:0003700|GO:0006355
Vivi597g00001 210 FunFam Ethylene-responsive transcription factor 2 63 124 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi597g00001 16 204 AP2-EREBP Transcription Factor Family AT3G23240 59.474 1.60e-72 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi597g00001 AP2 9.3e-15 CL0081