Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi596g00017 ATGGGGAAAAATGACTTTCTCACACCTAAGGCAATTGCCAATCGAATTAAAGCAAAAGGACTGCAGAAGCTTCGGTGGTATTGCCAGATGTGTCAGAAGCAATGTCGTGATGAGAATGGTTTCAAATGCCACTGCATGAGTGAAGGGCACCAGCGTCAAATGCAAATTTTTGGACAAAACCCAACCCGCATAGTTGAGGGCTATACCGAAGAGTTTGAAACAACTTTTCTTGAGCACATGAAGCGCAGCCATCGATTCAGCCGTGTGGCTGCCACTGTTGTTTATAATGAATACATAAATGATAGAAATCACGTTCATATGAACTCCACGGAGTGGGCTACACTTACTGAGTTTGTCAAGTACTTGGGTCGTACAGGAAAGTGTAAGGTTGAGGAAACACCCAAGGGATGGTTCATTACATACATAGATAGAGATTCAGAAACTCTTTTCAAAGAGAAGATGAAGAATAAGAGAATCAAGGCAGATTTGGTAGATGAAGAAAAACAAGAGAAAGAGATCCAAAAACAGATTGAAAGGGCTGAGCAATTGATGCAGCTATCTAATCCGGAGTCCGACCAACCTCACGTAGAGACTACGAGGGAACTAAATGCAGAAGACGGAATTAAGATAGGATTTTCTCTTGGGTCGTCTGCGAAACCTATCACCAAGGAAAAAGGTAACACATCGATGGGGGCATTTGATGAGGTTGATGCAGAGAAATACGAGGAAAGGAATCCTGTAAACAATTTGAAGAGGAAAGAAAGTGGTGGTGGAAAATCAACTTTAGATGAAATGATCAGGGAGGAAGAGAGGAAAAAGGAAAAAATCAACAGGAGGGATTATTGGTTACACGAGGGAATTGTTGTTAAGGTTATGAGCAAAGTCTTGGCTGAGAAGGGATACTACAAACAAAAAGGTGTTGTGAGAAAAGTGATTGACAAGTATGTAGGGGAAATAGAAATGCTAGAAAGCAAGCATGTGCTCAGAGTTGATCAGGAAGAGCTTGAAACGGTGATACCTCAGGTCGGGGGACGTGTAAAAATAGTAAACGGGGCTTATCGTGGATCACTTGCTAGACTGCTCGGGGTGGATACAGATCGTTTTTGCGCCAAGGTGCAGATAGAAAAAGGTGCTTATGATGGTAGAGTGCTTAAAGCCGTGGAGTACGAGGATATTTGTAAATTAGCCTAG 1191 0.4232 MGKNDFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQIFGQNPTRIVEGYTEEFETTFLEHMKRSHRFSRVAATVVYNEYINDRNHVHMNSTEWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRIKADLVDEEKQEKEIQKQIERAEQLMQLSNPESDQPHVETTRELNAEDGIKIGFSLGSSAKPITKEKGNTSMGAFDEVDAEKYEERNPVNNLKRKESGGGKSTLDEMIREEERKKEKINRRDYWLHEGIVVKVMSKVLAEKGYYKQKGVVRKVIDKYVGEIEMLESKHVLRVDQEELETVIPQVGGRVKIVNGAYRGSLARLLGVDTDRFCAKVQIEKGAYDGRVLKAVEYEDICKLA 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi596g00017 396 Gene3D - 340 396 IPR014722 -
Vivi596g00017 396 Gene3D - 286 339 - -
Vivi596g00017 396 SUPERFAMILY beta-beta-alpha zinc fingers 26 66 IPR036236 -
Vivi596g00017 396 Coils Coil 259 279 - -
Vivi596g00017 396 CDD KOW_KIN17 342 395 IPR041995 -
Vivi596g00017 396 FunFam DNA/RNA-binding protein KIN17, putative 61 160 - -
Vivi596g00017 396 Coils Coil 156 186 - -
Vivi596g00017 396 SMART Kin17_mid_2 52 178 IPR019447 -
Vivi596g00017 396 FunFam DNA/RNA-binding protein KIN17, putative 340 396 - -
Vivi596g00017 396 Gene3D - 60 160 IPR038254 -
Vivi596g00017 396 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
Vivi596g00017 396 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 396 IPR037321 -
Vivi596g00017 396 FunFam DNA/RNA-binding protein kin17-like 286 339 - -
Vivi596g00017 396 Pfam KN17 SH3-like C-terminal domain 278 331 IPR041330 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi596g00017 1 396 C2H2 Transcription Factor Family AT1G55460 69.952 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi596g00017 K13102 - gmx:100784271 688.337