Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi594g00009 ATGAGTCGAAAATTTACCCCCATTAAGGATGTTAACGATTCAAAGGAAACTTGGAGATTGGCCGTTCGAGTTGTTGATCTATGGAGTGTTATCAACAGCAAGGGTAAGGAGCATCTGGAGATGGGTGATAGGATACAAGTTTTGATTCGTTCTGACCATACACCGAAATGGAAAGAACGAATACGTGAAAACATGTCTTGCATAATCAACAATGGAACTGTTTATGATAATGATTTTCAGTGGAAGCTTTGTGATCATGACAAGAAGTTTGTGTTTATTGGTGGTACGACTGTGAAGGAAGTTGATATTCAGAACCTTCCTCCCAAAAGATTTTTTTTCAAAGACTTTACTGATATTCTTGGAGGCAATTGTGAGATGAACCGACTTGAAGATATTATTGGTGTGGTTCAGGAAATCAACAATTTTCAATATAACAATTCTGGAAAAAAGTCATTTGTTTCATTGAGTCTTAAAGACTTGAAAGGTGTCATTGTTAACTGCACATTATGGGAGAGCTACGGAACAATTTTTTTGGATTTCTACCATGATGAAAAAAACAGTGGTGCTATTGTAATTGTACTAACTCATGCAATGATAAAGGAATCACAAGTCTCAAATGGATGGAGTGGATCTAAATTGCTTATAAACGAAGACATTCCAGAGATAACTGAGTATTTATCAAAGTTACCTGCAAATGAGCAGATTGAAAAGCCTTCGCAGTCCTCAAAGGGTGTGTCTCTTTGGTCTGGTGCCTCTCAATTCACCCCAGTTGAAAGTTTCGTCCATAAGGCCAAATGTATATCTCTGAGTGACCTCTGCAAGGTGAAACAGGACATGCTATGTGTTACTGTTGGAACAACTAAAAAGTTTTTTGTCTCAAAACATGGTTGGTTTTATTATGGATGTACTAAATGTTCTCTAAAGGCATCTGATGTGAACAATCCATACAAATGTTCATGTGGACAGAATGTAGAACATGCCATACCAAGGTATCGAGTTGACATATATGTAGTTGATGGTGAATCAAAATTTCGCTTTGTGTTTTGGGACACTGACTGTGCCGACATTATTGGAAAGTCTGCTGATAGTATTTATAAAGCAAATTTGTTTTTCAAGGCAAAACTTTTCCAAGGACATGTTTTTAAATCAAATTTGTCATCAATTCATCAAACTGGATTTTGA 1182 0.3646 MSRKFTPIKDVNDSKETWRLAVRVVDLWSVINSKGKEHLEMGDRIQVLIRSDHTPKWKERIRENMSCIINNGTVYDNDFQWKLCDHDKKFVFIGGTTVKEVDIQNLPPKRFFFKDFTDILGGNCEMNRLEDIIGVVQEINNFQYNNSGKKSFVSLSLKDLKGVIVNCTLWESYGTIFLDFYHDEKNSGAIVIVLTHAMIKESQVSNGWSGSKLLINEDIPEITEYLSKLPANEQIEKPSQSSKGVSLWSGASQFTPVESFVHKAKCISLSDLCKVKQDMLCVTVGTTKKFFVSKHGWFYYGCTKCSLKASDVNNPYKCSCGQNVEHAIPRYRVDIYVVDGESKFRFVFWDTDCADIIGKSADSIYKANLFFKAKLFQGHVFKSNLSSIHQTGF 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi594g00009 393 Gene3D - 2 100 IPR012340 -
Vivi594g00009 393 Gene3D - 260 391 IPR012340 -
Vivi594g00009 393 Gene3D - 104 238 IPR012340 -
Vivi594g00009 393 SUPERFAMILY Nucleic acid-binding proteins 276 383 IPR012340 -
Vivi594g00009 393 SUPERFAMILY Nucleic acid-binding proteins 113 235 IPR012340 -
Vivi594g00009 393 CDD RPA1_DBD_A_like 19 98 - -
Vivi594g00009 393 PANTHER OS03G0429900 PROTEIN 5 370 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi594g00009 393 SUPERFAMILY Nucleic acid-binding proteins 4 101 IPR012340 -
Vivi594g00009 393 Pfam Domain of unknown function DUF223 40 120 IPR003871 -
Vivi594g00009 393 CDD RPA1_DBD_B_like 131 225 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi594g00009 1 364 Core DNA Replication Machinery Family AT5G08020 21.519 1.11e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi594g00009 - - vvo:131604714 655.981