Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi593g00005 ATGGATCACCATCGTATCAACACTGATCATGATCAAGTCAAAGGTAAAACCTCATTGTCTTCAAGTGGTAATAATGATGATATTAACAACAAGAAGATGTACAGAGGTGTGAGAAAAAGGAAGTGGGGAAAATGGGTATGTGAAATAAGGCTACCGAATAGCCGTGAAAGAATATGGTTAGGATCATACGATTCACCAGAGAAAGCGGCAAGAGCGTTCGACGCTGCACTTTACTGTCTTCGTGGTCGTCATGCAAGTTTCAATTTCCCTGATTCACCTTTTCATTTGGAAAACACTGCAGTTTCTAATGATCCGCAACAGATTCGAGAGATTGCTGCTAGCTTTGGAAATAAAAATCCATCAATTGTTATTGATAATAATAATAATAATACTAATAATGATACTAATAACACAGGTCCGTCCAAAACTGTGACCGAAATTATTGGCTCTTCATCTTCTACTACTATGCATGATAGTCGGAACTCGATTGATTGGACATTTTTGAATGTGTTAGAAGATGGTTCAAGTAATGATGCTACTTTAGTTGGTTCTGAAAATTATGATGATTTATTCTATTCTGACTTAGAAAAGATGCATTCGGATGAGTTATTGTATTACACTTCCCCACCACTTTTTGAGGATAATAATAATCAGAACCAATTAGTTGAAGATGATGGTAATGACCCTTTTTGTCATCAATCATTCCTTTGGAGCTGGAACTTCTGA 726 0.3636 MDHHRINTDHDQVKGKTSLSSSGNNDDINNKKMYRGVRKRKWGKWVCEIRLPNSRERIWLGSYDSPEKAARAFDAALYCLRGRHASFNFPDSPFHLENTAVSNDPQQIREIAASFGNKNPSIVIDNNNNNTNNDTNNTGPSKTVTEIIGSSSSTTMHDSRNSIDWTFLNVLEDGSSNDATLVGSENYDDLFYSDLEKMHSDELLYYTSPPLFEDNNNQNQLVEDDGNDPFCHQSFLWSWNF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi593g00005 241 CDD AP2 34 92 IPR001471 GO:0003700|GO:0006355
Vivi593g00005 241 Gene3D AP2/ERF domain 32 91 IPR036955 GO:0003700|GO:0006355
Vivi593g00005 241 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Vivi593g00005 241 SUPERFAMILY DNA-binding domain 33 92 IPR016177 GO:0003677
Vivi593g00005 241 MobiDBLite consensus disorder prediction 13 29 - -
Vivi593g00005 241 Pfam AP2 domain 34 82 IPR001471 GO:0003700|GO:0006355
Vivi593g00005 241 FunFam Ethylene-responsive transcription factor 2 32 91 - -
Vivi593g00005 241 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Vivi593g00005 241 MobiDBLite consensus disorder prediction 1 32 - -
Vivi593g00005 241 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Vivi593g00005 241 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Vivi593g00005 241 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 22 171 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi593g00005 23 183 AP2-EREBP Transcription Factor Family AT1G19210 48.765 9.75e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi593g00005 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi593g00005 - - psat:127084170 359.377