Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi593g00004 ATGTTAATTCAAATTAACTATACTATACTACAAATGGATATCACTACTGATCATGTGAAAGGTAAGACACCATCGTCTTCAACCAATTCAAGTGGTAATAATGATGATGATAACAACAAGAAGATGTACAGAGGTGTGAGAAAGAGAAAGTGGGGAAAATGGGTATGTGAAATAAGGCTACCGAATAGCCGTGAAAGAATCTGGTTAGGATCATATGATTCACCAGAGAAAGCAGCAAGAGCTTTTGACGCAGCACTTTACTGTCTTCGTGGTCGTCATGCAACTTTTAACTTCCCTGATACACCTTTCCTCTTGGATACTACTGCAGTTTCTAATGATCCACAACAGATTCGAGAGATTGCTGCTAACTTTGCCAACAAAACACCACCAATTGTTATTGATGGTAATAATAATAGTAATACTAATAATAATAACAATACTGATCAATCCAAAACTGTGACTGAAATTATTGGCTCTTCGTCTTCCACTACTACTACTATGCATGATAATGGTGGGAACTCCATTGATTGGACATTTTTGGATGTGTTGGATGGTTCAAGTAATGATGCTAGTTTTGTTGGGTCTGAAAATTATGGTGGTTTCTATTCTGATCTTGAGAAGATGAATTCGGGTGAGTTATTCAGTTTACCACAACAGCTACCACTATTTGAGGACAATATTCAGAAGGAACTAGTTAAAGGTGAAGGTGATGATGATGTTTATGATGATGACCCTTTTTCTCATCAACCATTCCTTTGGAACTGGGACTTTTGA 774 0.3695 MLIQINYTILQMDITTDHVKGKTPSSSTNSSGNNDDDNNKKMYRGVRKRKWGKWVCEIRLPNSRERIWLGSYDSPEKAARAFDAALYCLRGRHATFNFPDTPFLLDTTAVSNDPQQIREIAANFANKTPPIVIDGNNNSNTNNNNNTDQSKTVTEIIGSSSSTTTTMHDNGGNSIDWTFLDVLDGSSNDASFVGSENYGGFYSDLEKMNSGELFSLPQQLPLFEDNIQKELVKGEGDDDVYDDDPFSHQPFLWNWDF 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi593g00004 257 Pfam AP2 domain 43 91 IPR001471 GO:0003700|GO:0006355
Vivi593g00004 257 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 24 195 - -
Vivi593g00004 257 MobiDBLite consensus disorder prediction 18 36 - -
Vivi593g00004 257 FunFam Ethylene-responsive transcription factor 2 41 100 - -
Vivi593g00004 257 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Vivi593g00004 257 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Vivi593g00004 257 CDD AP2 43 101 IPR001471 GO:0003700|GO:0006355
Vivi593g00004 257 MobiDBLite consensus disorder prediction 18 43 - -
Vivi593g00004 257 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
Vivi593g00004 257 Gene3D AP2/ERF domain 41 100 IPR036955 GO:0003700|GO:0006355
Vivi593g00004 257 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Vivi593g00004 257 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi593g00004 43 126 AP2-EREBP Transcription Factor Family AT1G19210 72.619 2.50e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi593g00004 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi593g00004 - - vvo:131657735 392.504