LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi593g00003	ATGGATCATCATATCACCACTGTCAAAGGTAAGACCCCATCGTCTTCGAGTGATAATGATGATAGCAACAAGAAGATGTACAGAGGTGTGAGAAAGAGGAAGTGGGGAAAATGGGTATGTGAAATAAGGCTACCCAATAGCCGTGAAAGAATCTGGTTAGGATCATATGATTCACCAGAGAAAGCTGCAAGAGCATTCGACGCTGCACTTTACTGTCTTCGTGGTCGTCATGCAACTTTCAATTTCCCTGATTCACCTTTTCATTTGGAAAACACTGCAGTTTCTAACGATCCACAGCAGATTCGAGAGATTGCTGCTAACTTTGCCAACAAAACACCACCAATTGTTATTGATGGTAATAATAATAATATTAATAATAATAATAATAATACTGATGAATCCAAAACTGTGACTGAAATTATTGGCTCTTCGTCTTCCACTACTACTACTATGCATGATAATGTTCGGAACTCCATTGATTGGACATTTTTGGATGTGTTGGACGGTTCAAGTAATGATGGTAACTTTGTTGGGTCTGAGAATTATGGTGGTTTCTATTCTGATCTTGAGAAGATGAATTCGGGTGAGTTATTCAGTTTACCACAACAGCTACCACTATTTGAGGACAATATTCAGAAGGAACTAGTTAAAGGTGAAGGTGATGATGATGTTTATGATGATGACCCTTTTTCTCATCAACCATTCCTTTGGAACTGGGACTTTTGA	726	0.3843	MDHHITTVKGKTPSSSSDNDDSNKKMYRGVRKRKWGKWVCEIRLPNSRERIWLGSYDSPEKAARAFDAALYCLRGRHATFNFPDSPFHLENTAVSNDPQQIREIAANFANKTPPIVIDGNNNNINNNNNNTDESKTVTEIIGSSSSTTTTMHDNVRNSIDWTFLDVLDGSSNDGNFVGSENYGGFYSDLEKMNSGELFSLPQQLPLFEDNIQKELVKGEGDDDVYDDDPFSHQPFLWNWDF	241

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi593g00003	241	PRINTS	Ethylene responsive element binding protein signature	27	38	IPR001471	GO:0003700\|GO:0006355
	Vivi593g00003	241	PRINTS	Ethylene responsive element binding protein signature	49	65	IPR001471	GO:0003700\|GO:0006355
	Vivi593g00003	241	FunFam	Ethylene-responsive transcription factor 2	25	84	-	-
	Vivi593g00003	241	SUPERFAMILY	DNA-binding domain	26	85	IPR016177	GO:0003677
	Vivi593g00003	241	Pfam	AP2 domain	27	75	IPR001471	GO:0003700\|GO:0006355
	Vivi593g00003	241	CDD	AP2	27	85	IPR001471	GO:0003700\|GO:0006355
	Vivi593g00003	241	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	13	201	-	-
	Vivi593g00003	241	Gene3D	AP2/ERF domain	25	84	IPR036955	GO:0003700\|GO:0006355
	Vivi593g00003	241	SMART	rav1_2	26	89	IPR001471	GO:0003700\|GO:0006355
	Vivi593g00003	241	ProSiteProfiles	AP2/ERF domain profile.	26	83	IPR001471	GO:0003700\|GO:0006355
	Vivi593g00003	241	MobiDBLite	consensus disorder prediction	1	25	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi593g00003	22	131	AP2-EREBP Transcription Factor Family	AT1G19210	59.091	4.95e-38	129

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Vivi593g00003		AP2	1.4e-12	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi593g00003	-		-	vvo:131657735	382.874