Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi587g00007 ATGACGTCCTACTCACGAAGATCAAGGTATTCGCCCTCTCCCTCACCCTCACCCTCGCCATACAGGCGTTACGGTAGGTCTTTGTCCAGGTCTCTCTCAAGGTCCAGATCCGGAAGCCGTTCAAGGAGCATATCACGAGATGCTGAAAATCCGGGAAACAATTTGTATGTGACGGGACTGTCTCCTAGGATCACCAAGAGAGAACTGGAGAAGCATTTTGCTGCTGAAGGAAAAGTGGTAGATGTTCATCTGGTTGTTGATCCATGGACAAGGGAGTCCCGTGGTTTTGGATTTGTGACAATGAGTACTCTAGAAGAAGCTGATCGTTGTGTGAAGTATCTGGATCGTTCCGTACTTGAAGGGCGTGTTATCATGGTGGAGAAGGCTAGAAGACGACGCGGTCGAACCCCGACACCTGGGAAATATCTAGGTCTCAGGACTATTCGAGGACGGCGTCGTTCTCCAAGCTACTCTCCTCGACGTTCTCCTAGCTATTCTCCGTATAGAAGAAGCTACAGTCGATCACCTTCTTATCGTAGTAGAAGTCGCTCCTACTCTCCTGAATACAGGCGAAGGAAGTCCTACTCTCCTGAATACAGGCGAAGGACGTCTTACTCTCCTGAATACAGGCGAAGGAGGGCATACTCGCCATACTCTAGCCGACACAAGTCATACTATCATTATGATAGACACAGGTCATATTCCCGGTCTCGCTCTCCTTACAGCAGGTCTCCTGTCAGCATGCGTGACCGATCACACTCTCCCTATGACTCTAGATATGACTCACCTGATGATAGCTACTACAGAAGGTACCGTTACAGGTCAGTATCCCGTAGTGTTTCACCCAAACCAAGGAGGTCAAGGAGGAGGAGCTACTCAAGAAGTGTCTCTCCTGTTCGAAGTGTCTCCCCCAGGCCAAGGAAGAGATCAGGAAGGAGTCATTCAAGAACCTCTAGAAAGAGTGCTGGTTATTCCAAACTTAAGCATTCTCGATCAAGAAGTTCAAGTGTAAGAGCGAGTTCTAGATCGTTTTCAAGGTCGAATACTCCTGGATCTACATCTCCTTCAAATTGA 1074 0.4842 MTSYSRRSRYSPSPSPSPSPYRRYGRSLSRSLSRSRSGSRSRSISRDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVVDVHLVVDPWTRESRGFGFVTMSTLEEADRCVKYLDRSVLEGRVIMVEKARRRRGRTPTPGKYLGLRTIRGRRRSPSYSPRRSPSYSPYRRSYSRSPSYRSRSRSYSPEYRRRKSYSPEYRRRTSYSPEYRRRRAYSPYSSRHKSYYHYDRHRSYSRSRSPYSRSPVSMRDRSHSPYDSRYDSPDDSYYRRYRYRSVSRSVSPKPRRSRRRSYSRSVSPVRSVSPRPRKRSGRSHSRTSRKSAGYSKLKHSRSRSSSVRASSRSFSRSNTPGSTSPSN 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi587g00007 357 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 49 262 - -
Vivi587g00007 357 MobiDBLite consensus disorder prediction 305 335 - -
Vivi587g00007 357 MobiDBLite consensus disorder prediction 184 209 - -
Vivi587g00007 357 CDD RRM_SF 55 127 - -
Vivi587g00007 357 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 124 IPR000504 GO:0003723
Vivi587g00007 357 MobiDBLite consensus disorder prediction 1 54 - -
Vivi587g00007 357 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 131 IPR000504 GO:0003723
Vivi587g00007 357 SMART rrm1_1 54 127 IPR000504 GO:0003723
Vivi587g00007 357 MobiDBLite consensus disorder prediction 157 183 - -
Vivi587g00007 357 MobiDBLite consensus disorder prediction 250 272 - -
Vivi587g00007 357 MobiDBLite consensus disorder prediction 336 357 - -
Vivi587g00007 357 Gene3D - 4 137 IPR012677 -
Vivi587g00007 357 MobiDBLite consensus disorder prediction 130 357 - -
Vivi587g00007 357 MobiDBLite consensus disorder prediction 20 54 - -
Vivi587g00007 357 SUPERFAMILY RNA-binding domain, RBD 45 156 IPR035979 GO:0003676
Vivi587g00007 357 FunFam Serine/arginine-rich splicing factor SR45a 3 137 - -
Vivi587g00007 357 MobiDBLite consensus disorder prediction 279 293 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi587g00007 54 135 Eukaryotic Initiation Factors Gene Family AT2G36660 35.366 1.25e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi587g00007 - - vvo:131662224 312.768