Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi587g00006 ATGACGTCCTACTCACGAAGATCAAGGTATTCGCCCTCTCCCTCACCCTCACCCTCGCCATACAGGCGTTACGGTAGGTCTTTGTCCAGGTCTCTCTCAAGGTCCAGATCCGGAAGCCGTTCAAGGAGCATATCACGAGATGCTGAAAATCCGGGAAACAATTTGTATGTGACGGGACTGTCTCCTAGGATCACCAAGAGAGAACTGGAGAAGCATTTTGCTGCTGAAGGAAAAGTGGTAGATGTTCATCTGGTTGTTGATCCATGGACAAGGGAGTCCCGTGGTTTTGGATTTGTGACAATGAGTACTCTAGAAGAAGCTGATCGTTGTGTGAAGTATCTGGATCGTTCCGTACTTGAAGGGCGTGTTATCATGGTGGAGAAGGCTAGAAGACGACGCGGTCGAACCCCGACACCTGGGAAATATCTAGGTCTCAGGACTATTCGAGGACGGCGTCGTTCTCCAAGCTACTCTCCTCGACGTTCTCCTAGCTATTCTCCGTATAGAAGAAGCTACAGTCGATCACCTTCTTATCGTAGTAGAAGTCGCTCCTACTCTCCTGAATACAGGCGAAGGAAGTCCTACTCTCCTGAATACAGGCGAAGGACGGCATACTCGCCATACTCTAGCCGACACAAGTCATACTATCATTATGATAGACACAGGTCATATTCCCGGTCTCGCTCTCCTTACAGCAGGTCTCCTGTCAGCATGCGTGACCGATCACACTCTCCCTATGACTCTAGATATGACTCACCTGATGATAGCTACTACAGAAGGTACCGTTACAGGTCAGTATCCCGTAGTGTTTCACCCAAACCAAGGAGGTCAAGGAGGAGGAGCTACTCAAGAAGTGTCTCTCCTGTTCGAAGTGTCTCCCCCAGGCCAAGGAAGAGATCAGGAAGGAGTCATTCAAGAACCTCTAGAAAGAGTGCTGGTTATTCCAAACTTAAGCATTCTCGATCAAGAAGTTCAAGTGTAAGAGCGAGTTCTAGATCGTTTTCAAGGTCGAATACTCCTGGATCTACATCTCCTTCAAATTGA 1044 0.4837 MTSYSRRSRYSPSPSPSPSPYRRYGRSLSRSLSRSRSGSRSRSISRDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVVDVHLVVDPWTRESRGFGFVTMSTLEEADRCVKYLDRSVLEGRVIMVEKARRRRGRTPTPGKYLGLRTIRGRRRSPSYSPRRSPSYSPYRRSYSRSPSYRSRSRSYSPEYRRRKSYSPEYRRRTAYSPYSSRHKSYYHYDRHRSYSRSRSPYSRSPVSMRDRSHSPYDSRYDSPDDSYYRRYRYRSVSRSVSPKPRRSRRRSYSRSVSPVRSVSPRPRKRSGRSHSRTSRKSAGYSKLKHSRSRSSSVRASSRSFSRSNTPGSTSPSN 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi587g00006 347 CDD RRM_SF 55 127 - -
Vivi587g00006 347 MobiDBLite consensus disorder prediction 1 54 - -
Vivi587g00006 347 MobiDBLite consensus disorder prediction 184 199 - -
Vivi587g00006 347 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 131 IPR000504 GO:0003723
Vivi587g00006 347 SMART rrm1_1 54 127 IPR000504 GO:0003723
Vivi587g00006 347 MobiDBLite consensus disorder prediction 157 183 - -
Vivi587g00006 347 MobiDBLite consensus disorder prediction 295 325 - -
Vivi587g00006 347 MobiDBLite consensus disorder prediction 269 283 - -
Vivi587g00006 347 FunFam Serine/arginine-rich splicing factor SR45a 3 137 - -
Vivi587g00006 347 SUPERFAMILY RNA-binding domain, RBD 39 142 IPR035979 GO:0003676
Vivi587g00006 347 MobiDBLite consensus disorder prediction 130 347 - -
Vivi587g00006 347 MobiDBLite consensus disorder prediction 20 54 - -
Vivi587g00006 347 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 124 IPR000504 GO:0003723
Vivi587g00006 347 Gene3D - 4 137 IPR012677 -
Vivi587g00006 347 MobiDBLite consensus disorder prediction 240 262 - -
Vivi587g00006 347 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 45 252 - -
Vivi587g00006 347 MobiDBLite consensus disorder prediction 326 347 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi587g00006 54 135 Eukaryotic Initiation Factors Gene Family AT2G36660 35.366 1.13e-08 54.7