LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi587g00003	ATGAAAAAACCATCAACTTCAAATTTGCATCAATCTAACCAAAGGAAGAAAAATATTGGCACAAATAACATAAATAGACACAATCCTAAGAATGATCATGGTACCATGACAAATTTTAACTATGTTGTGAAAAAAATTTCAGGTCTGTTCACATTGATTCTGTCAGGGAAATCAAAAACATCTTCAGAACCTTTTGAAAATGATTCTGCAAGGAATAATAAAGTCAGAGGGGTATCATCTTCAACAACAGATGTATCATCTGAAAGTTCTAAGAGTTCATCAAAGTGGAAATCTTCTCATCCTTCAACACCTACTAGCACTTCTAGTAATCAAATTGGAGTTGGAAATTTTTCATTTGAGGAACTTTATAAGGGAACAGGAAAATTTTCTCCAGATAATAAGATTGGTGAAGGGGCGTTTGGAATTGTGTATAAGGGAAGGCTTTATGATGGAACCCTTGTGGCTGTAAAGTGTGCTAGGAAGGATGTACAAAAGAAACACTTGGCTGAGTTCAAGAATGAGATAAACACGCTATCGAAAATTGAGCATCTGAATCTTGTGAGATGGCATGGATATTTGGAGCATGGAGATGACAAGATTATTGTGATTGAATATGTTAATAATGGAACTCTTAGGGAACATCTAGATGGTGTGAGAGGAAATGGACTTGAAATTGGTAAGCGTTTGGATGTAGCAATTGATGTAGCTCATGCAGTTACATACCTTCATATGTACACAGATCATCCAATCATTCACAGAGATATAAAAGCATCAAATATCTTAATAACAGACGGTTTAAGAGCGAAAGTAGCAGATTTTGGTTTTGCTAGGTTGGGTTCAGAGGACCCTAATGCAACTCATGTTTCGACTCAAGTTAAAGGAACAGCTGGTTACTTGGATCCTGATTACATGAGAACAAGACAACTCAGTGAAAAGAGTGATGTTTATTCATTTGGTGTGTTACTTGTTGAAATGATGACAGGAAGATATCCAGTTGAACCAAAGAAGCCCCTCAATGAGAGAGTTACAATTAAATGGGCAATGCAGTTACTAAAACAAGGAGAAGAAGTGATTGCAATGGATCCAAGGCTTAGGAGAAGTTCAGCCTCAAACAAAGCAGTACAAAAGGTTCTCAAGCTCGCATTCCAATGCCTTGCACCTGTACGACGATCGCGGCCAACTATGCAGAATTGTGCAGAGGTTCTATGGGACATCAGAAAAGATTTCAGAGAAAAAGTGTTTTTTCGTCCTCCCATCGCTTCTCACCATTCAGCAGATTTTCCTCAGAAAGATGCGAGAAAGAATAGACGTAAGACGTTCGGTATTGAAGATGACAAGAAATATAAATTTGTGTCTGCATAA	1362	0.3744	MKKPSTSNLHQSNQRKKNIGTNNINRHNPKNDHGTMTNFNYVVKKISGLFTLILSGKSKTSSEPFENDSARNNKVRGVSSSTTDVSSESSKSSSKWKSSHPSTPTSTSSNQIGVGNFSFEELYKGTGKFSPDNKIGEGAFGIVYKGRLYDGTLVAVKCARKDVQKKHLAEFKNEINTLSKIEHLNLVRWHGYLEHGDDKIIVIEYVNNGTLREHLDGVRGNGLEIGKRLDVAIDVAHAVTYLHMYTDHPIIHRDIKASNILITDGLRAKVADFGFARLGSEDPNATHVSTQVKGTAGYLDPDYMRTRQLSEKSDVYSFGVLLVEMMTGRYPVEPKKPLNERVTIKWAMQLLKQGEEVIAMDPRLRRSSASNKAVQKVLKLAFQCLAPVRRSRPTMQNCAEVLWDIRKDFREKVFFRPPIASHHSADFPQKDARKNRRKTFGIEDDKKYKFVSA	453

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi587g00003	453	FunFam	Calmodulin-binding receptor-like cytoplasmic kinase 3	206	415	-	-
	Vivi587g00003	453	ProSitePatterns	Protein kinases ATP-binding region signature.	135	161	IPR017441	GO:0005524
	Vivi587g00003	453	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	250	262	IPR008271	GO:0004672\|GO:0006468
	Vivi587g00003	453	SMART	serkin_6	129	409	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi587g00003	453	MobiDBLite	consensus disorder prediction	1	36	-	-
	Vivi587g00003	453	Pfam	Protein tyrosine and serine/threonine kinase	132	402	IPR001245	GO:0004672\|GO:0006468
	Vivi587g00003	453	ProSiteProfiles	Protein kinase domain profile.	129	415	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi587g00003	453	MobiDBLite	consensus disorder prediction	59	112	-	-
	Vivi587g00003	453	Gene3D	Transferase(Phosphotransferase) domain 1	206	416	-	-
	Vivi587g00003	453	Gene3D	Phosphorylase Kinase; domain 1	87	205	-	-
	Vivi587g00003	453	SUPERFAMILY	Protein kinase-like (PK-like)	104	404	IPR011009	-
	Vivi587g00003	453	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	106	407	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi587g00003	124	405	Receptor kinase-like Gene Family	AT5G59700	42.908	3.93e-63	217

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IV	Vivi587g00003		PK_Tyr_Ser-Thr	6.3e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi587g00003	-		-	gmx:100819818	636.336