Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi584g00021 ATGGATCATCATCTCTTAACTTTTGAAACACCTTCCCCTTCATCTCATGTTCCTCCTGTTAACGTTAACGTTAATGTTCCTGTTCATGTTCCTTCTCTCACTCCCAATCTCACCATGTCTCACCCAATCCCCAACATTTCTCCCCAAAATCTCAACCCCCCAACAACCGATAAATCACTCCCAACCTTACTCGTACCAAAACCCGAACCTTTCGATGATTTCATGGCTGCCCAAGATTCCCAACAAACCCATTTCTCTCCGGGCTATCAAGAAGACGATCAATCTGATCTCTACACTGAATTCTACCGTGTTTCTCAGCTTTTCAATGCTACTTTCGGGACATCTTTGGGTCCTTTTTTTGCAATCAATGATTCGGCCAGTGTTAATGTTGCTCCTTCGGTTGTTGAGGAAACGGTTGTCAACAATGTTTGTAACCCAGACCTAAATCTGAACCCTAATATAGGTGTTGAATCCGCGGATTCTCATCCTCAGTCGTATGATAACAATGATGGAAATGATAACAATGATATGGCTATTGTTGTTGTTCCGGAGAAACAAGAATCGACTTCGGCAGTTGCTGTGGCTACTAGGAAGAAGGCGAGCCAGGTGATGGAGCTTGTGAGGGTTTCAGATCTGAGTATGAAGGAGCATGTAAATTGTCGGGAGGTGATGAGGAGGACAAGGATGGTCTATGATTCGCTTCGCGTGTTGGCGAGCATTGAAGAGGAAAAGAGATTTGCTGCGGAAGTTGCTGTTATGGAGGAAGAGAAGAGAGTGGCTGAGGAAAAAAGGTTGGCTGAGGAGAGGAGATTGGCGGAAGAAGTTGCAGTTATGGAGGAGGAGATGAGAATAGGTGAGGAGAAGAGTGGGCAGGCTGCAGGGGTGGAGGTGGAAACGGAAACGCCGAGTGGAAAAAAGAGGCGTATCCGCATACGTGGTGATATGAGGGCGGCAGCGTTAATGAGGAAGAGTCAGTTGTGGCTGTATCGAGATAAGAGGATAGTTGGACCGATACCTGGAGTTTATGTTGGTGATGTGTTTCTTTTTAGGATGGAGTTGTGTGTGGTTGGTTTGCATATGCAGATACAAGCCGGAATTGATTATCTGCCTAAAAGTAGGTGTTCCAATGGTGAACCGATTGCTACTAGTGTGATTGTTTCGGGTGGATATGAGGATGACATGGAGTTGGATGATGGTGATGTTATAATCTACACTGGCCATGGAGGGCAGGAGAAGAACTCGTCTAGGCAAATTTGTGATCAGAAATTGGTGGGTGGAAACCTTGCTTTGGAAAGGAGTATGCATTATGGGATCGAGGTTAGGGTTATTCGCGGGATGAAGTATGAAGGGAGTGCGTCCGGTTCTGGTAAGATTTATGTTTATGATGGAGTGTATAGGATTGTTGAGTGTTGGTTTGATGTAGGAAAGTCTGGTTTTGGAGTTTATAAGTATAAGCTTTTGAGAATTGAGGGGCAGGCTAAGATGGGTAGTGCTGTTCTCAAAGATGCTCGGGAAATTAGGAAAAGTGGGTTCGACTTTAAGCCTATGCATTGTCTTTCCATTGATATTTCGGACAAGAGGGAGAAGGTTCCTATTAGGCTTTTTAATGACATAGATGACAGTCAGGAACCTCTTTATTATCAGTATCTTCCAAATACTAGTTTCCCGCCGTTTGTGTTTCATCAGAATGGGAAAGCTACTGGATGTGAGTGTGTCGATGGTTGTACTGATGGTTGTTTTTGCTCTGTGAAGAATGGAGGAGAGCATCCTTATAATCTACAGGGTTTGCTTGTGAAAGGGAAGCCTTTGATTTTTGAATGTGGCCCTTTTTGCTCATGTCCTCCCAATTGTCGTAACCGTGTTGCACAAAAAGGGCTCAAATATAGGTTGGAAGTGTTTAGGTCTACACAGACAGGTTGGGGAGTTAGGTCTTTGGACCTTATTCAGGCTGGAGCCTTTATCTGCGAGTATACGGGGGTTGTTTTGACTAGGGAGCAAGCAGAAATTTTAACAATGAACGGTGATTCGTTGATATATCCTAATCGGTTTTCAGATAGATGGGCAGAATGGGGGGATTTATCTCAGATATACACTGAATATGCGCGTCCGTCCTATCCATCAATTCCTCCTCTAGATTTTTCTCTGGATGTGTCTACAATGAGAAATGTTGCTTGCTATATGAGCCATAGTTCAAGTCCAAATGTATTTGTTCAGTTTGTTCTCTATGATCACAACAATTTGATGTTTCCGCATGTTATGCTATATGCAATGGAGAACATCCCTCCAATGAGAGAGCTAAGCGTTGATTATGGAGTTGCGGATGAGTGGACGGGAAAACTCTCTATATGTATGTAA 2355 0.4378 MDHHLLTFETPSPSSHVPPVNVNVNVPVHVPSLTPNLTMSHPIPNISPQNLNPPTTDKSLPTLLVPKPEPFDDFMAAQDSQQTHFSPGYQEDDQSDLYTEFYRVSQLFNATFGTSLGPFFAINDSASVNVAPSVVEETVVNNVCNPDLNLNPNIGVESADSHPQSYDNNDGNDNNDMAIVVVPEKQESTSAVAVATRKKASQVMELVRVSDLSMKEHVNCREVMRRTRMVYDSLRVLASIEEEKRFAAEVAVMEEEKRVAEEKRLAEERRLAEEVAVMEEEMRIGEEKSGQAAGVEVETETPSGKKRRIRIRGDMRAAALMRKSQLWLYRDKRIVGPIPGVYVGDVFLFRMELCVVGLHMQIQAGIDYLPKSRCSNGEPIATSVIVSGGYEDDMELDDGDVIIYTGHGGQEKNSSRQICDQKLVGGNLALERSMHYGIEVRVIRGMKYEGSASGSGKIYVYDGVYRIVECWFDVGKSGFGVYKYKLLRIEGQAKMGSAVLKDAREIRKSGFDFKPMHCLSIDISDKREKVPIRLFNDIDDSQEPLYYQYLPNTSFPPFVFHQNGKATGCECVDGCTDGCFCSVKNGGEHPYNLQGLLVKGKPLIFECGPFCSCPPNCRNRVAQKGLKYRLEVFRSTQTGWGVRSLDLIQAGAFICEYTGVVLTREQAEILTMNGDSLIYPNRFSDRWAEWGDLSQIYTEYARPSYPSIPPLDFSLDVSTMRNVACYMSHSSSPNVFVQFVLYDHNNLMFPHVMLYAMENIPPMRELSVDYGVADEWTGKLSICM 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi584g00021 784 ProSiteProfiles Pre-SET domain profile. 567 625 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi584g00021 784 Pfam SAD/SRA domain 335 492 IPR003105 -
Vivi584g00021 784 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 126 783 IPR025794 GO:0016571
Vivi584g00021 784 SMART G9a_1 331 492 IPR003105 -
Vivi584g00021 784 SUPERFAMILY PUA domain-like 318 501 IPR015947 -
Vivi584g00021 784 SMART set_7 628 777 IPR001214 GO:0005515
Vivi584g00021 784 Gene3D SET domain 497 784 IPR046341 -
Vivi584g00021 784 Pfam SET domain 639 771 IPR001214 GO:0005515
Vivi584g00021 784 ProSiteProfiles YDG domain profile. 336 488 IPR003105 -
Vivi584g00021 784 ProSiteProfiles SET domain profile. 628 771 IPR001214 GO:0005515
Vivi584g00021 784 Coils Coil 243 270 - -
Vivi584g00021 784 SUPERFAMILY SET domain 513 783 IPR046341 -
Vivi584g00021 784 Gene3D - 333 496 IPR036987 -
Vivi584g00021 784 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 151 778 - -
Vivi584g00021 784 SMART preset_2 520 612 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi584g00021 784 Pfam Pre-SET motif 523 620 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi584g00021 332 773 Su(var)3-9 homologs AT5G04940 41.387 9.84e-98 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi584g00021 SAD_SRA 9e-48 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi584g00021 - K11420 tpra:123924427 957.207