Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi57g00115 ATGTCTGAAAGAATTTCTTCCGGAAATCTTGAAGATAAAAAATTGAAATGCAAAATGATTGAAGAACCCGAGCTTGAATTAACAAAGGAATTGGAAAATATAACACCAACCTTTCAAGTTAATTCTGAGAAGGGAAAAATGGTTGAAGAACCTAAGATGATAACATCTTCTGTTCAATTTGAAGGTTTATCGGCTCTAAGGGCTGGCAATATCACCATGCCAACTTCTGGTCTGTTCGAGAACGGTGAACGTTCGAGTTCATCGAAAAATGTTATTGCTGAAGTTCTCAACGAGGAAGTGAAGGAATTTCCTTGTCAATTTTGTGACAAGAAGTTCTCGAGTCCTCAAGCGCTCGGAGGACATCAAAACGCTCATAAGAAAGAGCGTGACGCCAAAAGAAATGAACAAAAAAAGAGGGAGGAGGAAATGGAGTCCACCCTAAGGTTTGGATCTAATTTTTCATACCTTTATCCTTCTGCAAGTTCTGTTAACTATCAAGTGCATCCTTATTTTCATGGCAACTTCCAACAATCAATTGGGACTCGTATGAACAATAGCATGCCTTCTTTGCTTGGTTCTCCATCTGTTGGTGTTGGTTATGGAGGGATGCATATGCCAAATACACCCTCCCCACCACATCCATTTATGAGGTCAGTACCAAAACCACTCATCACAACACCACAATTTGGGATGACTAATTTTATGGGTGGAAATCAAACTTCTGGGCGATCAATTCCTCACTGGCCAAACATTGTGGAGTCGGGACTTTTTGGCCAAACTAATCAGACCCATTCATCTCATGACGCTGGAGAAGGAAGTTCTAATGCTCAATTTTCTTATCAAGGCCTTCCAATAGAAACTCGTGATTTTATTGGAGAAGGTCAACCTCTAGCAGATGCTAATGTGTCTTCTTCATCAAATGAATCAACAGTGGAAGACCTCGACTTGAATCTCAAGCTTTAA 963 0.4019 MSERISSGNLEDKKLKCKMIEEPELELTKELENITPTFQVNSEKGKMVEEPKMITSSVQFEGLSALRAGNITMPTSGLFENGERSSSSKNVIAEVLNEEVKEFPCQFCDKKFSSPQALGGHQNAHKKERDAKRNEQKKREEEMESTLRFGSNFSYLYPSASSVNYQVHPYFHGNFQQSIGTRMNNSMPSLLGSPSVGVGYGGMHMPNTPSPPHPFMRSVPKPLITTPQFGMTNFMGGNQTSGRSIPHWPNIVESGLFGQTNQTHSSHDAGEGSSNAQFSYQGLPIETRDFIGEGQPLADANVSSSSNESTVEDLDLNLKL 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi57g00115 320 SUPERFAMILY beta-beta-alpha zinc fingers 101 130 IPR036236 -
Vivi57g00115 320 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Vivi57g00115 320 Pfam C2H2-type zinc finger 103 128 - -
Vivi57g00115 320 MobiDBLite consensus disorder prediction 296 320 - -
Vivi57g00115 320 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Vivi57g00115 320 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 83 320 IPR044246 GO:0009788
Vivi57g00115 320 Coils Coil 124 144 - -
Vivi57g00115 320 Gene3D Classic Zinc Finger 83 153 - -
Vivi57g00115 320 MobiDBLite consensus disorder prediction 122 145 - -
Vivi57g00115 320 MobiDBLite consensus disorder prediction 298 313 - -
Vivi57g00115 320 MobiDBLite consensus disorder prediction 116 145 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi57g00115 101 133 C2H2 Transcription Factor Family AT5G14010 66.667 4.83e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi57g00115 zf-C2H2_6 1.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi57g00115 - - psat:127115617 292.352