Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi57g00102 ATGAAAAGAAGAATCAAAGAACTTCTACGCCTCTCATTTTCATCTCCACACTCTAAAATTCACCACCAACCACTCTCAAGATCATTACAACCCACTTCTTCTCAATGTTCAACATCTTTCTCAACCTTTTCAAAATCCCAAAGGGATTCACTGATTTTCCAACAGTTTAAAGAAAGGAAACTCAAAGGGTCATCAAAAGACTCAATTTTTAACCCAAAAGTTTCAAATTCAGTTCCAGAAAGTTTTGATACTAACGTTGAGAAAACAGTCCAAGAGGGTTTGGAAAATGAGAGTGAAAATGAAGATTCTATGGTGGTTGCTAACTTTAAGGAATTGGGTTTGAGTGAAGTTCTTGTTGAGGTTATGGAAGAGATTGGTGATTTTGTACCAACTGAGATACAGTGTGTTGTTATTCCAACTATTTTGGAAGGGAAGAGTTTGTTGTTGAGTTCACCTTCTCAACCTGATAGAACATTGGCCTACTTGTTGCCCCTTATTCAGCTGCTACGACGAGATAGAGAGTTGCTTGGTTCGAATTCAAAGCATCCTCGAGCTGTTGTGCTTTGTGCTTCCGAGGAGAAAGTTGAACAGTGCTTTAATGCAGCAAGATATACCATCCATAATGCAGAATTGAAGTCTGCAAAGAATCGTGCTTCATCGGATAACGAAAAGTCAAATTCCTCAATTGGCTTAATGATTGGAACTCCTTGTGAGATTCTTCAATACATTGATGAAGGGATTGTTGTTCCTGCAGAACTAAAATACTTGGTATTGGATGAAGCCGATTCTATGCTTGGTAACCACCTTGGTCCTGAAATCCATAAAATTATCCGACCATTACAAAATCATGACTCCAAATTCAATGCCAATAGATTGCAGACAATTTTGGCAATTTCAACTATAGCTGAGGTTTTGGGTGAAAAGTCGGCCATTGTGGAACGTCTCGAGAGCAATCATGCCGGAAATATTTCTGCATTGTCTATAGAAATGGAGGAAGCAGAAATTTTTCATTTGACTGACTCTCTGGATGCTCTTAGGAAAAAATTGGAGGAGGCCATGAATTCCCTTTAG 1071 0.3866 MKRRIKELLRLSFSSPHSKIHHQPLSRSLQPTSSQCSTSFSTFSKSQRDSLIFQQFKERKLKGSSKDSIFNPKVSNSVPESFDTNVEKTVQEGLENESENEDSMVVANFKELGLSEVLVEVMEEIGDFVPTEIQCVVIPTILEGKSLLLSSPSQPDRTLAYLLPLIQLLRRDRELLGSNSKHPRAVVLCASEEKVEQCFNAARYTIHNAELKSAKNRASSDNEKSNSSIGLMIGTPCEILQYIDEGIVVPAELKYLVLDEADSMLGNHLGPEIHKIIRPLQNHDSKFNANRLQTILAISTIAEVLGEKSAIVERLESNHAGNISALSIEMEEAEIFHLTDSLDALRKKLEEAMNSL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi57g00102 356 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 138 319 IPR014001 -
Vivi57g00102 356 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 300 IPR027417 -
Vivi57g00102 356 Pfam DEAD/DEAH box helicase 131 296 IPR011545 GO:0003676|GO:0005524
Vivi57g00102 356 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 107 135 IPR014014 GO:0003724
Vivi57g00102 356 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 45 302 - -
Vivi57g00102 356 Gene3D - 65 309 IPR027417 -
Vivi57g00102 356 SUPERFAMILY PABC (PABP) domain 304 354 IPR036053 GO:0003723
Vivi57g00102 356 Coils Coil 328 356 - -
Vivi57g00102 356 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 245 356 IPR002004 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi57g00102 106 280 Eukaryotic Initiation Factors Gene Family AT3G19760 21.788 1.13e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi57g00102 - - gmx:100800575 453.366