Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi57g00101 ATGTGTTCGTGTTCGCACTCTCCCATTTGTTTTTCGACCCTGATTCGCCAAAATATCAATGACACCTATCTAACCCCAAAACCCCAAAACAAACTTAACTCTTCTTCTTCATCAATGGCGGGTGCTAGCGGAAGAATCCTCTTCTCCCTCTCTTCTTCCATAACCAGACGCCTTAACGGTAACCGTTTCTCATTCTTCACACTCTCAAACCCTACCACCATTCCCCCACGATTCAGACCTCTCTGTTCCATAACCGCTACACCGGAAGCTCTATCAGACACTGACACTGAAAAACACTCGATTCTTCTCGAGAAGCTGAGAGTTAGACACTTAAAAGGAAGTGTTACAAAAACAGCTTCTGAAAATGTGAAGAAATCTGAGGGAAAGAAGAAGGTTGTTGTTGTTGATGATGATGTTGATGATGTTGTTGGGAGTTTTCAGGAATTGGGGATTAGTGATGAGGTTATGGGTGCTGTTAAAGAAATTGGGATTGAAGTTCCTACTGAGATACAGTGTATTGGTATTCCCGCTGTTCTGGAGGGGAAAAGTGTTGTTTTAGGGTCTCATACTGGTTCTGGAAAAACTCTTGCTTACTTGCTTCCACTTGTTCAGTTGCTAAGACGAGATGAGCAACTGAATGGACTAGTTTTGAAGCCCAAGCGTCCCCGAGCCGTTGTGCTATGCCCTACAAGGGAGTTGTCTGAGCAGGTTTTTCGAGTTGCAAAATCAATTAGTCATCATGCACGATTCAGGTGCACCATGGTAAGTGGTGGTGGCCGTCTTAGGCCTCAGGAGGATTCACTCAGCAACCCCATTGATATGGTAGTTGGTACCCCTGGCAGGATTCTTCAACATATCGAAGAGGGAAATATGGTATATGGTGACATCCAATACGTGGTATTAGACGAGGCAGACACGATGTTTGATCGGGGCTTTGGTCCTGATATTCGCAAGTTCATAGCCCCATTAAAACAGCGTGCTTCTAAACCTGATAGCCTAGGTTTCCAGACTGTTTTGGTTACTGCAACCATGACAAAGGCTGTGCAAAATCTGGTTGATGAGGAGTTTCAAGGCATTGTCCATCTGCGCACTTCCACATTGCATAAAAAGATTTCTTCCGCTCGTCATGATTTTCTTAAACTTTCTGGTTCTGAGAACAAGCTGGATGCATTACTTCAGGTATTAGAGCCAAGTCTTGCCAAGGGTAACAGGGTAATGGTTTTCTGCAACACATTGAATTCTAGCCGTGCTGTGGATCACTTTCTTGGTGAAAATCTGATTTTTACAGTGAACTACCATGGGGAGGTACCAGCGGAGCAAAGGGTTGAAAACCTCAACAAGTTTAAGAGTAACACTGGAGATTGCCCTACATTGGTTTGCACAGACTTGGCTGCTAGGGGTCTGGACTTGGATGTCGATCACGTTATCATGTTTGATTTCCCTCTGAATTCTATCGATTACCTCCATCGCACGGGTAGAACTGCTCGTATGGGTGCTAAAGGGAAAGTAACAAGTTTGGTTACTAAAAAGGACTTTGGCTTGGCAACCAAAATAGAGGAGGCGATAAGAAAGAATGAAAGTTTGGAGGCTATCACTAAAGAAAGTCTCCGGATGGACGTAACCAGGAACCAAATCACTGAGCAAAGAAGAAAGAACAAAAATGTGGTCAAAACTTCAAAAGCTAGGGACAAATCTGATTCTCGTCCAACTTCTTCCGCTAACAGGTCCGGTATTAGGGACAAATCTGGTTCTCGTCCAACTTCTACCGCTAACAGGTCAGGTAGGGACAAATCCAATTCTCGCACCAGTTCTGCAAATACTAGGTCAGGTAGTAGGGACAAATCCGATTCGCGCACCAGTTCTACAAATACTAGGTCTGGTATTAGGGGCAAATCTGATTCTCGCACCAGTTCTGAGGATACCAGGTCAGGTATTAGGGGCAAATCTGATTCTCGCACCGGTTCTGGGAATACCAGATCAGGCATGAAATTTGGTAAACAATCATCACCATCAAAGTCTTCAAAGAAAGGATTTCCCGTTTCAAAATCTGTAAAATCTTCCAGTCCAAGTAGCTTCATAAAAGCTTCTTCGGAGAGTAAGCGAACGGGTAAAAGGGCCACTGCCACCAAATCTACAAATCCTAAACTCAGTGTTGTCGGGTTTAGGGGGCGGAATGCATCAGCATCAGATAAGAGACAAACATTTTAA 2208 0.4416 MCSCSHSPICFSTLIRQNINDTYLTPKPQNKLNSSSSSMAGASGRILFSLSSSITRRLNGNRFSFFTLSNPTTIPPRFRPLCSITATPEALSDTDTEKHSILLEKLRVRHLKGSVTKTASENVKKSEGKKKVVVVDDDVDDVVGSFQELGISDEVMGAVKEIGIEVPTEIQCIGIPAVLEGKSVVLGSHTGSGKTLAYLLPLVQLLRRDEQLNGLVLKPKRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRLRPQEDSLSNPIDMVVGTPGRILQHIEEGNMVYGDIQYVVLDEADTMFDRGFGPDIRKFIAPLKQRASKPDSLGFQTVLVTATMTKAVQNLVDEEFQGIVHLRTSTLHKKISSARHDFLKLSGSENKLDALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENLIFTVNYHGEVPAEQRVENLNKFKSNTGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVTKKDFGLATKIEEAIRKNESLEAITKESLRMDVTRNQITEQRRKNKNVVKTSKARDKSDSRPTSSANRSGIRDKSGSRPTSTANRSGRDKSNSRTSSANTRSGSRDKSDSRTSSTNTRSGIRGKSDSRTSSEDTRSGIRGKSDSRTGSGNTRSGMKFGKQSSPSKSSKKGFPVSKSVKSSSPSSFIKASSESKRTGKRATATKSTNPKLSVVGFRGRNASASDKRQTF 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi57g00101 735 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 387 539 IPR001650 -
Vivi57g00101 735 Gene3D - 373 584 IPR027417 -
Vivi57g00101 735 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 96 533 - -
Vivi57g00101 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 510 IPR027417 -
Vivi57g00101 735 Pfam Helicase conserved C-terminal domain 387 498 IPR001650 -
Vivi57g00101 735 Gene3D - 107 363 IPR027417 -
Vivi57g00101 735 Pfam DEAD/DEAH box helicase 168 351 IPR011545 GO:0003676|GO:0005524
Vivi57g00101 735 CDD DEADc 155 354 - -
Vivi57g00101 735 MobiDBLite consensus disorder prediction 542 735 - -
Vivi57g00101 735 MobiDBLite consensus disorder prediction 570 610 - -
Vivi57g00101 735 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 175 362 IPR014001 -
Vivi57g00101 735 MobiDBLite consensus disorder prediction 648 697 - -
Vivi57g00101 735 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 144 172 IPR014014 GO:0003724
Vivi57g00101 735 MobiDBLite consensus disorder prediction 543 569 - -
Vivi57g00101 735 MobiDBLite consensus disorder prediction 632 647 - -
Vivi57g00101 735 SMART ultradead3 163 372 IPR014001 -
Vivi57g00101 735 SMART helicmild6 416 498 IPR001650 -
Vivi57g00101 735 CDD SF2_C_DEAD 375 507 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi57g00101 143 520 Eukaryotic Initiation Factors Gene Family AT3G19760 29.504 9.04e-42 155