Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi57g00016 ATGTTTTCTCCTTACGGAAAGATTGTGTCGGAGGACTTCTTGTGGCACACTCGAGGTCCAAAACGTGGGGAACCACGCGGTTTCGCTTTTCTACAATATAGCACAAAAGAGGAAGCAATATTGGCCAAGGAGAAAATGCACGGACGGTTAGCTTGCGGCCGGCCATTAGTGGTCCGCCTAGCAAGTGAGAGGTATGCTATGGAAGTAGCAGATAGCTCTACAAAACCAGTAGGCGAAGGGCACAAGTTGCATCTCACTGGTGGCGGCATGGGACAATCAAGCCGTGATGCGAAAATTGCTGCAATAAAGAACAAGTTGAAGTCTTTAGAGGAAGATAATTCTAGGAACAAGAAACAAAAGCAGAGTGATAATATATCTTGA 381 0.4593 MFSPYGKIVSEDFLWHTRGPKRGEPRGFAFLQYSTKEEAILAKEKMHGRLACGRPLVVRLASERYAMEVADSSTKPVGEGHKLHLTGGGMGQSSRDAKIAAIKNKLKSLEEDNSRNKKQKQSDNIS 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi57g00016 126 Coils Coil 99 119 - -
Vivi57g00016 126 Gene3D - 1 71 IPR012677 -
Vivi57g00016 126 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 63 IPR000504 GO:0003723
Vivi57g00016 126 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1 56 IPR000504 GO:0003723
Vivi57g00016 126 MobiDBLite consensus disorder prediction 69 126 - -
Vivi57g00016 126 SUPERFAMILY RNA-binding domain, RBD 1 67 IPR035979 GO:0003676
Vivi57g00016 126 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 20 118 - -
Vivi57g00016 126 MobiDBLite consensus disorder prediction 100 119 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi57g00016 1 64 Eukaryotic Initiation Factors Gene Family AT1G71770 39.062 1.43e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi57g00016 K24527 - gmx:100804800 218.394