Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi576g00002 ATGGAAGTACTTCCTTGTTCTGGCGTTCAATATGCCGGGGAATCTGATTGCCCTCAACGCGGTTCAGAAACAACTTTTATCTACCAGGAAGAACCTAGTTGCCCGGAAAACGCCGAACATGCTAAATTGGCAGATGATCCACTGAATGAATCACTGCATAACATGCAAGGGCCAGAGATAGAAATGCAAGATGACGGGACACAGAATGTGTGTGCTCCGTTGACTAATTCGAATTGCCAATGCAATGGAGCTTCATGTTGTGACTGTCAAGCAGAAGATCAAAAGAATTACAGTGGTTTCGTTGATTTTGATGATGAAATGATGAATGAACGTTACCTAACCTCTGAAAATTCTCTCGCTGTTCATGATACAATTGAAAATGAATCCCCAAACAACGGTAGGGAAGGAGACTTGTCATTTTCTGAACCCCAGTGGCTAGAGGGAGATGAATCTGTTGCATTGTGGGTCAAGTGGAGAGGGAAATGGCTGGCTGGTATCCGATGTGCAAGGGCCGATTGGCCATTGTCAACATTGAGAGCAAAACCAACTCATGACCGAAAGAAGTATTTTGTCATATTTTTTCCGCACACGAAGATTTATTCTTGGGCAGATACGCTGCTTGTTAGGTCAATTGATGAGTTTCCACATCCTGTTGCATACAAGACTCATCAGGTAGGACTGAAATTAGTAAGGGACTTAACAGCTGCACGGCGGTTTATAATGCAAAAGCTAGTTGTTGGCATGTTGAACATCGTTGATCAGTTTCATCTTAATGCTTTAACAGAAATTGCCCGCGATGTGAAGGTCTGGAAGGCATTTGCCATGGAGGCTTCTCATTCTAATGGTTATTCTGATTTTGGAAGAATGCTTTTAAAGATACACAATAGCATCCTGGGGCAATACATAAGAGCTGACTGGTTACAGTATTCTTCTCACTCTTGGGTTGAACGATGTCAGAGTACAAATAGTGCGGAATCGGTAGAACTGCTGAAGGAGGAATTGTTTGATTCTATTTTGTGGAATGATGTCAACAATCTCTGGGACTCACCAGCGCAACCAATATTAGGTTCTGAATGGAAAACCTGGAAGCATGATGTAACGAAATGGTTTTCAGCATCACCTTCCTTGTCTAGCAGCAAAGACACTCCTAAACAGATTTCTGTTGATCCATACCAAACAAACCTGCAGGCTTCTAGAAAAAGGCCTAAACTTGAAGTTCGTCGTGCAGATACACATGCTTCAAAAGTGGAGTTCAAGGGTTCAGATCACACTATTGCTCTTGTGAATGACCCTGGTTTCTTTAAGAATCAGGAGACATTGAGCACATTGACACCTGAGGCTTTTAAACATGAAAATATTCGAAACGTATCTATCCCAAATGATATGTCCAGTAATTTGACCAACAATTGGAATGAAATTGTAGTTGAGGCTGCTGATTCTGGTTTCTTGCATGCCAAAGAAATTGAATCAACACCTATAAATGAAATGGTTGCTGTAAACTCTGTGGATCCTGGTAGTAAGAATCGACAATGTATAGCTTTCATTGAAGCCAAAGGAAGACAGTGTGTGAGATGGGCAAATGAGGGAGATGTATACTGTTGTGTGCACTTATCCTCTCGTTTTTTGGCCGGCTCAGCAAACGCCGAAAACCCGGGTCAAACTGATACTCCTATGTGTGATGGTACAACTGTTGTGGGTACTAAATGTAAGCATCGGGCTCTACCTGGATCATTATACTGTAAGAAACATCGGCCTAATGCTGAAACAGAACAGGTCTCATGGTTACCCCAAAGTACTATAAAGAAGAAACATGAAGAAAGTTATACTGGTTCAGAGAACATGTTCTGTAAAGACATAGTATTGGTAAAGGCCGAAGGTTCACTGCAAGTGGATCCAGCTCCATCCATTGCTGGTGATTCATTACATGGAGAAAACAACTTGTCTGAGAAGCCAATGCATTATGTTGCACCGGAGGCTCCGATCTGTATAGGGTCTCCTCCATTTGATAATACAAATCCTTGTAGGGAAGCTCCTAAGCGCTATTCCTTATACTGTGAAATCCACCTTCCAAGTTGGCTTAAACGAGCAAGAAATGGGAAGAGTAGAATAGTATCAAAAGAAGTGTTCTCAGACCTTTTGAGGGGTTGCAGCTCATGGGAGCAAAAGATACATCTGCATGAAGCCTGCGAGCTTTTTTATAGGCTATTCAAAAGCATTTTATCACTAAGAAACCAAGTCCCTAAGGATGTCCAATTCCAATGGGCTTTGACCGAAGCCTCTAAAGAATTTGGTGTTGGGGAATTTTTTACTAAGTTGGTTCTTAGTGAAAAAGAGAGAATCAAATCAATGTGGGGATTCAATGATGACATGAATGTATCATCTGTAATAGCAGAAGAACAACAACCACCACTCTTGCTCTTGCCACCCACAATTAATCAGAGCTGTGATGATGAAAATGCCATTAAATGTAAGATATGTTCAACACAATTTCCTGATGACCAAACACTCGGTAACCATTGGATGGACAGTCATAAAAAGGAAGCGCAGTGGCTGTTTAGAGGCTATGCATGTGCCATCTGTCTGGATTCTTTTACTAATAAGAAACTATTGGAAACCCATGTTCAAGAGAGACATCATGTGCAGTTTGTCGAACAGTGTATGCTTCTCCAGTGCATTCCTTGTGGGAGTCATTTTGGAAATTCTGAACAATTATGGCAGCATGTTTTATCATCTCACCATGTTGATTTTAAGCCATCTAAAGCTCCGGAGCAGCAAACTTTCTCTACTGGCGAAGGTTCACGGGTAAAACATGACCAGGGAAATTCGGCTGCTTTGGAAAATAATTCCGAGAATCCAGGTGGTCCACGGAGGTTTATTTGCAGGTTTTGTGGGTTGAAATTTGATTTACTACCTGACCTAGGACGACATCATCAAGCTGCTCATATGGCGCCCAATCTGGTTAGCAACCGTCCCGCTAAGAGGGGGGTTCGCTATTATGCATATAAATTAAAAACTGGCAGGCTAAGCCGCCCTAGATTTAAAAAAAGTTTGGCAGCCGCGGCCTCATTAAGGATGAGAAATAAAGCTAATGCTAATTTAAAGCGATGCATTCAGGCAACAAAGTCAATCGGTGTGGAAGAAACAACCGTGCAACCTCATATAACAGAAACAACAAATATCAGTGGATTGACAGAACATCAATGTTCAGCTGTTGCCAAAATTTTGTTTTCAGAAATTCAGAAAACTAAACCTCGGCCTAACAATCTTGATATTTTATCAGTTGCTCGCACTGCTTGCTGCAAAGTTCATCTAGTAGCATCACTGGAAGAGAAATTTGGAGCTCTACCTGAAAGGCTCTATTTAAAGGCAGCAAAACTTTGCAGTGAGCGTAATATTGTTGCGAAATGGCACCATGAGGGATTTGCTTGTCCCCGAGGTTGCAACTTGTCAAAGGATCAAGGCTCACTATCTCCTTTAGAAACTCTTCCAAATGGTTTCGTAATGTCAAAATCTGTAAATTTGTCTGATCCTACGGGTGATGAGTGGGATGTTGACGAGTTTCACTGCATAATCGATGCACAAAGTTTACAATTAGGTTCACGGAAAAGGGCTACTGTATTGTGCGATGACATTAGCTTTGGGAAGGAGTCAGTTCCAGTTATTTGTGTAGTAGATCAAGAATTTCTACATTCTCTAAATGAGCAAGGGTTTAATGAACAAGATGTAATCTCTTCTAAACCTTGGGAGAGTTTTTCCTATGTTACGAAGCCAATAATTGATCAATCCCTAAGTCTTGGTTCAGAGAGTCCACAATTGGGATGTGCCTGCTCATATTCTACCTGCGGTCCTGAAACATGTGATCACGTATACCTATTTGGTAATGACTATGCTGACGCAAAAGACATAGCTGGGAAACCAATGCGAGGCAGATTCCCATATGATGCAAATGGTCGAATAATATTGGAGGAAGGTTATCTTGTCTATGAGTGTAACCATATGTGCAGATGCAACAAATTCTGTCCAAACAGAATACTACAGAACGGAGTACGAGTCAAATTGGAAGTCTTCAAAACAGAGAAAAAGGGATGGGCAGTAAGGGCTGGAGAAACTATTCTACGCGGTACATTTGTGTGTGAGTACATAGGAGAGGTTTTGGATGTGCAGGAGGCACACCGCAGGCGCGAAAGATATGGCGAAGGGAATAGCAGTTATTTCTACGACATCAGTGCTCGAGTTAATGATATGAGCAGATTGATGGAAGAACATGTTCAATATGTGGTTGATGCTACTAAATATGGAAATGTGTCGAGGTTCATCAATCATAGCTGCTCACCGAATCTTGTGAGTCACCAAGTTCTTATAGAGAGCATGGAATGTGAGCGTTCACACATTGGTTTTTATGCAAGTCGAGATATTTCTGTAGGCGAAGAGCTGACATATGGCTTTCAGTATGAGCTTGTACCCGGTGAAGGATCTCTCTGTCTTTGCGGATCATCAAATTGTAGAGAACGACTTTACTAG 4521 0.4167 MEVLPCSGVQYAGESDCPQRGSETTFIYQEEPSCPENAEHAKLADDPLNESLHNMQGPEIEMQDDGTQNVCAPLTNSNCQCNGASCCDCQAEDQKNYSGFVDFDDEMMNERYLTSENSLAVHDTIENESPNNGREGDLSFSEPQWLEGDESVALWVKWRGKWLAGIRCARADWPLSTLRAKPTHDRKKYFVIFFPHTKIYSWADTLLVRSIDEFPHPVAYKTHQVGLKLVRDLTAARRFIMQKLVVGMLNIVDQFHLNALTEIARDVKVWKAFAMEASHSNGYSDFGRMLLKIHNSILGQYIRADWLQYSSHSWVERCQSTNSAESVELLKEELFDSILWNDVNNLWDSPAQPILGSEWKTWKHDVTKWFSASPSLSSSKDTPKQISVDPYQTNLQASRKRPKLEVRRADTHASKVEFKGSDHTIALVNDPGFFKNQETLSTLTPEAFKHENIRNVSIPNDMSSNLTNNWNEIVVEAADSGFLHAKEIESTPINEMVAVNSVDPGSKNRQCIAFIEAKGRQCVRWANEGDVYCCVHLSSRFLAGSANAENPGQTDTPMCDGTTVVGTKCKHRALPGSLYCKKHRPNAETEQVSWLPQSTIKKKHEESYTGSENMFCKDIVLVKAEGSLQVDPAPSIAGDSLHGENNLSEKPMHYVAPEAPICIGSPPFDNTNPCREAPKRYSLYCEIHLPSWLKRARNGKSRIVSKEVFSDLLRGCSSWEQKIHLHEACELFYRLFKSILSLRNQVPKDVQFQWALTEASKEFGVGEFFTKLVLSEKERIKSMWGFNDDMNVSSVIAEEQQPPLLLLPPTINQSCDDENAIKCKICSTQFPDDQTLGNHWMDSHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCMLLQCIPCGSHFGNSEQLWQHVLSSHHVDFKPSKAPEQQTFSTGEGSRVKHDQGNSAALENNSENPGGPRRFICRFCGLKFDLLPDLGRHHQAAHMAPNLVSNRPAKRGVRYYAYKLKTGRLSRPRFKKSLAAAASLRMRNKANANLKRCIQATKSIGVEETTVQPHITETTNISGLTEHQCSAVAKILFSEIQKTKPRPNNLDILSVARTACCKVHLVASLEEKFGALPERLYLKAAKLCSERNIVAKWHHEGFACPRGCNLSKDQGSLSPLETLPNGFVMSKSVNLSDPTGDEWDVDEFHCIIDAQSLQLGSRKRATVLCDDISFGKESVPVICVVDQEFLHSLNEQGFNEQDVISSKPWESFSYVTKPIIDQSLSLGSESPQLGCACSYSTCGPETCDHVYLFGNDYADAKDIAGKPMRGRFPYDANGRIILEEGYLVYECNHMCRCNKFCPNRILQNGVRVKLEVFKTEKKGWAVRAGETILRGTFVCEYIGEVLDVQEAHRRRERYGEGNSSYFYDISARVNDMSRLMEEHVQYVVDATKYGNVSRFINHSCSPNLVSHQVLIESMECERSHIGFYASRDISVGEELTYGFQYELVPGEGSLCLCGSSNCRERLY 1506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi576g00002 1506 MobiDBLite consensus disorder prediction 921 949 - -
Vivi576g00002 1506 ProSiteProfiles Post-SET domain profile. 1490 1506 IPR003616 -
Vivi576g00002 1506 ProSiteProfiles Pre-SET domain profile. 1272 1348 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi576g00002 1506 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1506 - -
Vivi576g00002 1506 SMART preset_2 1208 1335 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi576g00002 1506 ProSiteProfiles Zinc finger C2H2 type domain profile. 958 986 IPR013087 -
Vivi576g00002 1506 Pfam SET domain 1362 1480 IPR001214 GO:0005515
Vivi576g00002 1506 ProSitePatterns Zinc finger C2H2 type domain signature. 891 913 IPR013087 -
Vivi576g00002 1506 ProSitePatterns Zinc finger C2H2 type domain signature. 960 981 IPR013087 -
Vivi576g00002 1506 ProSiteProfiles Zinc finger C2H2 type domain profile. 855 878 IPR013087 -
Vivi576g00002 1506 Pfam Pre-SET motif 1211 1343 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi576g00002 1506 SMART c2h2final6 821 844 IPR013087 -
Vivi576g00002 1506 SMART c2h2final6 855 878 IPR013087 -
Vivi576g00002 1506 SMART c2h2final6 889 912 IPR013087 -
Vivi576g00002 1506 SMART c2h2final6 958 981 IPR013087 -
Vivi576g00002 1506 ProSitePatterns Zinc finger C2H2 type domain signature. 823 844 IPR013087 -
Vivi576g00002 1506 ProSiteProfiles SET domain profile. 1351 1483 IPR001214 GO:0005515
Vivi576g00002 1506 Gene3D SET domain 1189 1487 IPR046341 -
Vivi576g00002 1506 SMART set_7 1351 1489 IPR001214 GO:0005515
Vivi576g00002 1506 MobiDBLite consensus disorder prediction 918 951 - -
Vivi576g00002 1506 ProSiteProfiles Zinc finger C2H2 type domain profile. 889 918 IPR013087 -
Vivi576g00002 1506 Gene3D Classic Zinc Finger 816 887 - -
Vivi576g00002 1506 SUPERFAMILY SET domain 1202 1496 IPR046341 -
Vivi576g00002 1506 Pfam Zinc finger C2H2-type, 3 repeats 857 982 IPR040689 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi576g00002 124 1505 C2H2 Transcription Factor Family AT2G23740 51.643 0.0 1386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi576g00002 Pre-SET 5.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi576g00002 - - gmx:100786757 2345.47