Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi573g00003 ATGGGAAGAGGAAGAGTGGAGTTGAAGAGAATTGAAAACAAAATCAACAGACAAGTTACCTTCGCTAAACGCAGGAACGGCCTTCTGAAAAAAGCTTATGAACTTTCCGTTCTTTGCGATGCTGAAGTCGCGCTTATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTTTGCAGCAGTTCAAGCATGCTCAAAACGCTAGAGAGGTATCAGAAATGCAACTATGGTGCGCCTGAAGCTAATGTGTCTGCACGGGAAGCATTGGAGTTAAGCAGCCAACAGGAATATTTGAAGCTGAAGGCACGTTATGAAGCATTACAACGGTCCCAAAGGAACCTTATGGGAGAAGACCTTGGCCCTCTGAGCAGCAAAGAGCTCGAATCGCTTGAAAGGCAGCTAGATTCATCCTTGAAGCAAATAAGATCAACCAGGACCCAGTTCATGTTGGATCAGCTCTCAGATCTTCAACGCAAGGAACATATGCTAAGCGAGGCTAACAGGTCTCTCAGACAAAGGTTGGAAGGGTATCAATTGAACCAACTCCAAATGAATGCATGTGTTGAAGAAATGGGCTATGGTCGGCATCCAGGTCAAAATCAGGGTGATGGCCTCTTTCAACAATTGGAGTGTGAGCCAACATTACAAATTGGTTATCAGCATGATCCAGGATCAGTTGTCACAGCAGGTCCAAGCATGAGTAATTACATGGCAGGATGGTTACCATAG 726 0.449 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEANVSAREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHMLSEANRSLRQRLEGYQLNQLQMNACVEEMGYGRHPGQNQGDGLFQQLECEPTLQIGYQHDPGSVVTAGPSMSNYMAGWLP 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi573g00003 241 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vivi573g00003 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Vivi573g00003 241 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Vivi573g00003 241 Coils Coil 152 172 - -
Vivi573g00003 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi573g00003 241 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Vivi573g00003 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi573g00003 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi573g00003 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi573g00003 241 FunFam MADS-box transcription factor 7 13 98 - -
Vivi573g00003 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi573g00003 241 ProSiteProfiles K-box domain profile. 89 184 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi573g00003 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi573g00003 241 Coils Coil 126 146 - -
Vivi573g00003 241 Pfam K-box region 91 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi573g00003 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi573g00003 1 241 MADS-box Gene Family AT1G24260 73.984 3.76e-116 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi573g00003 K-box 1.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi573g00003 - - gmx:100805078 442.58